Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005307.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21693 .. 26369

Gene Structure 4677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgactaacgccagagcggagccaagcggcagtggcggcggcgccggaggtgggttccacactgtgcaggcggagcgtgacctagaatccaattgggaactagatcttggaacaaaactcgaagagtatttgctgaggatttgctccggcgaactgcccgccgaagccgacggcattgtgtctattaatttcgccgaagctgcactgctacttcagggttcggttcaggtgtatagccggaaggtcgaatatctttactcgttggatgctctacttgctagcatagctgaaaacgagaagcaaactgaactggctgctcgtgtttcaacatggaaacagaaaattgagcacaacttggaagagcaagaatcacaccctccttttgacattcaagactatggtgaaagaattcttgatagactatcccttgaaccagaagatagaaatgtattgcccttttctgatgtcgtcaaagatcagggaaagtatgatgtggccaggagcttttctgcactactgcaactggtaaacaatggaaatgttgagttggataggagtgtagttgatggtggtcagcctgtttgtttcacagctgccaatcctttccatgttcggctcctaagacatgacagaagaagagtggaaactggatttcggctgtcgagaaagagagttaagtctccattgaggaaagcatgtagaaaagtcgacaacgacaaaaatggaattgagaaatcacccttcatcaagtcatcatcaaagacaagtaaatcaaaaagaagatctactccaacaaactgcaagttgtcagccggaaagaatggcgtcacagggcgcagtcctgatgccaagaggagaaaaagtactcgatttgttgaaccacttgatgacctacattctccagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006282 GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CNDH2_C CNDH2_M CNDH2_N

Protein Analysis

302

Amino Acids

33.58

Weight (kDa)

8.78

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNDH2_N	PF06278	20 - 123	7.3e-29	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
CNDH2_C	PF16858	87 - 213	1.5e-34	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	42, 825
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	865
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	327, 392, 431, 878
AjnI	CCWGG	2 cut(s)	497, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	4 cut(s)	200, 287, 504, 593
AluI	AGCT	4 cut(s)	200, 287, 504, 593
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	684
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	200, 314, 593
ApoI	RAATTY	1 cut(s)	408
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	44, 837
AsuHPI	GGTGA	2 cut(s)	413, 729
AsuNHI	GCTAGC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	187, 301, 580
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	499, 903
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	3 cut(s)	83, 101, 279
BfoI	RGCGCY	1 cut(s)	45
BglII	AGATCT	2 cut(s)	103, 782
BisI	GCNGC	6 cut(s)	28, 37, 40, 201, 315, 594
BlsI	GCNGC	6 cut(s)	29, 38, 41, 202, 316, 595
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	2 cut(s)	499, 903
BmiI	GGNNCC	4 cut(s)	21, 43, 56, 617
BmrFI	CCNGG	2 cut(s)	499, 903
BmsI	GCATC	2 cut(s)	256, 835
BmtI	GCTAGC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	42, 825
BsaJI	CCNNGG	1 cut(s)	902
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	3 cut(s)	315, 528, 652
BseBI	CCWGG	2 cut(s)	499, 903
BseDI	CCNNGG	1 cut(s)	902
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	3 cut(s)	315, 528, 652
BseRI	GAGGAG	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	187, 301, 580
BsgI	GTGCAG	3 cut(s)	86, 186, 495
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	4 cut(s)	45, 147, 238, 813
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	103, 475, 782
BspACI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	21, 43, 56, 617
BspOI	GCTAGC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	315, 528, 652
BssECI	CCNNGG	1 cut(s)	902
BssMI	GATC	3 cut(s)	103, 475, 782
BssNI	GRCGYC	2 cut(s)	42, 825
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	499, 903
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	3 cut(s)	117, 354, 631
BstACI	GRCGYC	2 cut(s)	42, 825
BstC8I	GCNNGC	3 cut(s)	69, 159, 280
BstDEI	CTNAG	2 cut(s)	134, 620
BstF5I	GGATG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 837
BstKTI	GATC	3 cut(s)	106, 478, 785
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	3 cut(s)	103, 475, 782
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 36, 73, 200, 275, 284
BstNI	CCWGG	2 cut(s)	499, 903
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	497, 901
BstV1I	GCAGC	3 cut(s)	187, 301, 580
BstX2I	RGATCY	2 cut(s)	103, 782
BstYI	RGATCY	2 cut(s)	103, 782
BsuRI	GGCC	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	37, 203
BtsIMutI	CAGTG	3 cut(s)	37, 60, 203
Cac8I	GCNNGC	3 cut(s)	69, 159, 280
CfoI	GCGC	2 cut(s)	44, 837
CseI	GACGC	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	864
CviAII	CATG	4 cut(s)	330, 608, 626, 696
CviQI	GTAC	1 cut(s)	864
DdeI	CTNAG	2 cut(s)	134, 620
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	105, 477, 784
DpnII	GATC	3 cut(s)	103, 475, 782
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	3 cut(s)	117, 354, 631
EarI	CTCTTC	3 cut(s)	117, 354, 631
EciI	GGCGGA	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	497, 901
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	4 cut(s)	333, 611, 629, 699
FaiI	YATR	8 cut(s)	234, 284, 331, 399, 489, 609, 627, 697
FatI	CATG	4 cut(s)	329, 607, 625, 695
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	6 cut(s)	28, 37, 40, 201, 315, 594
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	6 cut(s)	28, 37, 40, 201, 315, 594
FspBI	CTAG	3 cut(s)	83, 101, 279
GlaI	GCGC	2 cut(s)	43, 836
GluI	GCNGC	6 cut(s)	28, 37, 40, 201, 315, 594
GsuI	CTGGAG	1 cut(s)	885
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	4 cut(s)	45, 147, 238, 813
HgaI	GACGC	1 cut(s)	814
HhaI	GCGC	2 cut(s)	44, 837
Hin1I	GRCGYC	2 cut(s)	42, 825
Hin1II	CATG	4 cut(s)	333, 611, 629, 699
Hin6I	GCGC	2 cut(s)	42, 835
HinP1I	GCGC	2 cut(s)	42, 835
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	86, 368
HpaII	CCGG	4 cut(s)	45, 147, 238, 813
HphI	GGTGA	2 cut(s)	413, 729
Hpy166II	GTNNAC	2 cut(s)	529, 709
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	4 cut(s)	392, 413, 663, 842
Hpy8I	GTNNAC	2 cut(s)	529, 709
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	235, 751
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	67, 203, 512, 520, 801
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 36, 73, 200, 275, 284
HpyF3I	CTNAG	2 cut(s)	134, 620
Hsp92I	GRCGYC	2 cut(s)	42, 825
Hsp92II	CATG	4 cut(s)	333, 611, 629, 699
HspAI	GCGC	2 cut(s)	42, 835
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	103, 475, 782
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	5 cut(s)	19, 73, 149, 501, 621
Lsp1109I	GCAGC	3 cut(s)	187, 301, 580
LweI	GCATC	2 cut(s)	256, 835
MaeI	CTAG	3 cut(s)	83, 101, 279
MaeIII	GTNAC	2 cut(s)	77, 826
MalI	GATC	3 cut(s)	105, 477, 784
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	3 cut(s)	103, 475, 782
MboII	GAAGA	6 cut(s)	134, 371, 449, 645, 648, 792
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	2 cut(s)	103, 782
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	91, 187, 342, 408, 726
MluNI	TGGCCA	1 cut(s)	497
Mly113I	GGCGCC	1 cut(s)	42
MmeI	TCCRAC	3 cut(s)	243, 528, 815
MnlI	CCTC	5 cut(s)	41, 129, 387, 681, 846
Mox20I	TGGCCA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	186, 675
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	4 cut(s)	45, 147, 238, 813
MspR9I	CCNGG	2 cut(s)	499, 903
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	499, 903
MwoI	GCNNNNNNNGC	6 cut(s)	33, 36, 73, 200, 275, 284
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	3 cut(s)	103, 475, 782
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	4 cut(s)	333, 611, 629, 699
NlaIV	GGNNCC	4 cut(s)	21, 43, 56, 617
NmuCI	GTSAC	2 cut(s)	77, 826
NspI	RCATGY	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	86, 368
PkrI	GCNGC	6 cut(s)	29, 38, 41, 202, 316, 595
PluTI	GGCGCC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	497, 901
PspGI	CCWGG	2 cut(s)	497, 901
PspN4I	GGNNCC	4 cut(s)	21, 43, 56, 617
PsuI	RGATCY	2 cut(s)	103, 782
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	865
RsaNI	GTAC	1 cut(s)	864
SalI	GTCGAC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	186, 675
SatI	GCNGC	6 cut(s)	28, 37, 40, 201, 315, 594
Sau3AI	GATC	3 cut(s)	103, 475, 782
ScaI	AGTACT	1 cut(s)	865
ScrFI	CCNGG	2 cut(s)	499, 903
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	52, 84, 202, 231, 246, 289, 506, 595, 894
SfaNI	GCATC	2 cut(s)	256, 835
SfoI	GGCGCC	1 cut(s)	43
Sse9I	AATT	5 cut(s)	91, 187, 342, 408, 726
SsiI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	83, 101, 279
StyD4I	CCNGG	2 cut(s)	497, 901
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	5 cut(s)	120, 246, 662, 708, 868
TasI	AATT	5 cut(s)	91, 187, 342, 408, 726
TatI	WGTACW	1 cut(s)	863
TauI	GCSGC	3 cut(s)	30, 39, 42
TfiI	GAWTC	2 cut(s)	86, 368
Tru1I	TTAA	2 cut(s)	186, 675
Tru9I	TTAA	2 cut(s)	186, 675
TscAI	CASTG	3 cut(s)	37, 67, 210
TseFI	GTSAC	2 cut(s)	77, 826
TseI	GCWGC	3 cut(s)	200, 314, 593
Tsp45I	GTSAC	2 cut(s)	77, 826
TspDTI	ATGAA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	37, 67, 210
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	699
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	3 cut(s)	83, 101, 279
ZrmI	AGTACT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.