Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005314.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

143230 .. 146886

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgtcgaactaccggttttgtcctcctcctttttctgaaaatgacattgaaacatatggggtttacttctccattgcgaggcagacaccgcatctcctccttcctcttcttcgtcttctctcagatcgccttcttcttcagctcttgtacatctcaacatatggcggtggaaaggcaaaggctttgaagcaacccaaggctgagaagaaggagtacgacgaggatgatttgcccaagcttcagaagaagaaggatgaggaaaaggtgagagctcaattgtcacaatatcctggttcctttttgatgcagttattgatggaaagctgttattctaatgatgagcagacactgaaggagcttagagccaaggcatcacagaaaggtcttttggaggatgatttgcccaagcttcagaagaagaaggatgaggaaaaggtgagagctcaattgtcacaatatcctggttcctttttgatgcagttattgatggaaagctgttattctaatgatgagcagacactgaaggagcttagagccaaggcatcacagaaaggtcttttggaggtgctggcctcaagaagagtggaaagaaatgaggggttttcgagacccaaaatttggatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TMA7

Protein Analysis

208

Amino Acids

24.13

Weight (kDa)

8.93

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TMA7	PF09072	56 - 93	3.4e-08	Translation machinery associated TMA7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	618
AciI	CCGC	2 cut(s)	89, 165
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	5 cut(s)	122, 224, 371, 395, 542
AfaI	GTAC	2 cut(s)	149, 215
AfiI	CCNNNNNNNGG	2 cut(s)	78, 618
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	50, 187
AjnI	CCWGG	2 cut(s)	289, 460
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 542, 574
AluBI	AGCT	9 cut(s)	142, 238, 272, 324, 358, 409, 443, 495, 529
AluI	AGCT	9 cut(s)	142, 238, 272, 324, 358, 409, 443, 495, 529
Alw21I	GWGCWC	2 cut(s)	274, 445
Alw26I	GTCTC	1 cut(s)	601
AlwNI	CAGNNNCTG	2 cut(s)	349, 520
AoxI	GGCC	1 cut(s)	570
ApoI	RAATTY	1 cut(s)	615
ArsI	GACNNNNNNTTYG	1 cut(s)	600
AsiGI	ACCGGT	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	277, 448
BanII	GRGCYC	2 cut(s)	274, 445
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	274, 445
BccI	CCATC	2 cut(s)	310, 481
BciT130I	CCWGG	2 cut(s)	291, 462
BcoDI	GTCTC	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	291, 462
BmiI	GGNNCC	2 cut(s)	295, 466
BmrFI	CCNGG	2 cut(s)	291, 462
BmsI	GCATC	5 cut(s)	100, 294, 380, 465, 551
BpiI	GAAGAC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	195, 366, 537
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 618
Bse118I	RCCGGY	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	291, 462
BseDI	CCNNGG	3 cut(s)	195, 366, 537
BseGI	GGATG	5 cut(s)	229, 259, 400, 430, 627
BseLI	CCNNNNNNNGG	2 cut(s)	78, 618
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	135, 192
BseRI	GAGGAG	2 cut(s)	15, 86
BshFI	GGCC	1 cut(s)	572
BshTI	ACCGGT	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	274, 445
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	78, 618
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	572
Bso31I	GGTCTC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	274, 445
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	89, 165
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	2 cut(s)	134, 193
BspLI	GGNNCC	2 cut(s)	295, 466
BspTNI	GGTCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	195, 366, 537
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	3 cut(s)	195, 366, 537
Bst2UI	CCWGG	2 cut(s)	291, 462
Bst6I	CTCTTC	2 cut(s)	111, 574
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	4 cut(s)	121, 201, 359, 530
BstF5I	GGATG	5 cut(s)	229, 259, 400, 430, 627
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	291, 462
BstSCI	CCNGG	2 cut(s)	289, 460
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	572
BtsCI	GGATG	5 cut(s)	229, 259, 400, 430, 627
BtsIMutI	CAGTG	2 cut(s)	347, 518
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	2 cut(s)	349, 520
Cfr10I	RCCGGY	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	148, 214
CspAI	ACCGGT	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviQI	GTAC	2 cut(s)	148, 214
DdeI	CTNAG	4 cut(s)	121, 201, 359, 530
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	111, 574
EarI	CTCTTC	2 cut(s)	111, 574
Ecl136II	GAGCTC	2 cut(s)	272, 443
Eco130I	CCWWGG	3 cut(s)	195, 366, 537
Eco24I	GRGCYC	2 cut(s)	274, 445
Eco31I	GGTCTC	1 cut(s)	601
Eco53kI	GAGCTC	2 cut(s)	272, 443
Eco57I	CTGAAG	5 cut(s)	122, 224, 371, 395, 542
EcoICRI	GAGCTC	2 cut(s)	272, 443
EcoRII	CCWGG	2 cut(s)	289, 460
EcoT14I	CCWWGG	3 cut(s)	195, 366, 537
EcoT38I	GRGCYC	2 cut(s)	274, 445
ErhI	CCWWGG	3 cut(s)	195, 366, 537
FaiI	YATR	4 cut(s)	55, 57, 160, 162
FauNDI	CATATG	2 cut(s)	55, 160
FokI	GGATG	4 cut(s)	236, 266, 407, 437
FriOI	GRGCYC	2 cut(s)	274, 445
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	1 cut(s)	13
HindIII	AAGCTT	2 cut(s)	236, 407
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	2 cut(s)	277, 448
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	4 cut(s)	37, 124, 243, 414
Hpy188III	TCNNGA	2 cut(s)	576, 606
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	7 cut(s)	110, 140, 202, 244, 346, 415, 517
HpyCH4V	TGCA	2 cut(s)	307, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	4 cut(s)	121, 201, 359, 530
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	355, 526
LpnPI	CCDG	6 cut(s)	26, 276, 303, 447, 474, 554
LweI	GCATC	5 cut(s)	100, 294, 380, 465, 551
MaeIII	GTNAC	2 cut(s)	279, 450
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MfeI	CAATTG	2 cut(s)	275, 446
MhlI	GDGCHC	2 cut(s)	274, 445
MluCI	AATT	3 cut(s)	275, 446, 615
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	291, 462
MunI	CAATTG	2 cut(s)	275, 446
MvaI	CCWGG	2 cut(s)	291, 462
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeI	CATATG	2 cut(s)	55, 160
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	295, 466
NmuCI	GTSAC	2 cut(s)	279, 450
PflMI	CCANNNNNTGG	1 cut(s)	618
PinAI	ACCGGT	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	274, 445
Psp6I	CCWGG	2 cut(s)	289, 460
PspGI	CCWGG	2 cut(s)	289, 460
PspN4I	GGNNCC	2 cut(s)	295, 466
PstNI	CAGNNNCTG	2 cut(s)	349, 520
RsaI	GTAC	2 cut(s)	149, 215
RsaNI	GTAC	2 cut(s)	148, 214
SacI	GAGCTC	2 cut(s)	274, 445
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	291, 462
SduI	GDGCHC	2 cut(s)	274, 445
SfaNI	GCATC	5 cut(s)	100, 294, 380, 465, 551
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	3 cut(s)	275, 446, 615
SsiI	CCGC	2 cut(s)	89, 165
SstI	GAGCTC	2 cut(s)	274, 445
StyD4I	CCNGG	2 cut(s)	289, 460
StyI	CCWWGG	3 cut(s)	195, 366, 537
TaqI	TCGA	2 cut(s)	5, 605
TasI	AATT	3 cut(s)	275, 446, 615
TatI	WGTACW	1 cut(s)	147
TscAI	CASTG	2 cut(s)	354, 525
TseFI	GTSAC	2 cut(s)	279, 450
Tsp45I	GTSAC	2 cut(s)	279, 450
TspRI	CASTG	2 cut(s)	354, 525
Van91I	CCANNNNNTGG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.