Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005341.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 248

Gene Structure 247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

atgagtaaagagagtagtactgtttttaaggcatgggaggccacagttcgcaagacgcaggctgcaagaaaacgtgcaaatagtatatttggactttctgtggaccatgatcacgatcatgatagtgatcatgatcatagtagtgacgatagtgattatggccccgaggatatgatatacaatgcagacaagattcttccgaatggagactactacaccggacaatggtgtgaaaattttcctcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006897 GO:0007164 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010118 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042545 GO:0042995 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0098590 GO:0098657 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

82

Amino Acids

9.39

Weight (kDa)

4.92

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	39, 160
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	103, 161
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	49
BclI	TGATCA	3 cut(s)	109, 127, 133
BcoDI	GTCTC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmcAI	AGTACT	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	103, 161
BmiI	GGNNCC	1 cut(s)	163
BsaBI	GATNNNNATC	3 cut(s)	114, 126, 132
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse8I	GATNNNNATC	3 cut(s)	114, 126, 132
BseDI	CCNNGG	1 cut(s)	165
BseJI	GATNNNNATC	3 cut(s)	114, 126, 132
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	41, 162
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	41, 162
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	109, 115, 127, 133
BspANI	GGCC	2 cut(s)	41, 162
BspHI	TCATGA	2 cut(s)	118, 130
BspLI	GGNNCC	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	109, 115, 127, 133
Bst4CI	ACNGT	2 cut(s)	22, 46
BstC8I	GCNNGC	1 cut(s)	60
BstKTI	GATC	4 cut(s)	112, 118, 130, 136
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	4 cut(s)	109, 115, 127, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	41, 162
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	2 cut(s)	118, 130
Cfr13I	GGNCC	2 cut(s)	103, 161
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	5 cut(s)	33, 107, 119, 131, 245
CviJI	RGCY	3 cut(s)	41, 62, 162
CviKI_1	RGCY	3 cut(s)	41, 62, 162
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	4 cut(s)	111, 117, 129, 135
DpnII	GATC	4 cut(s)	109, 115, 127, 133
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	164
FaeI	CATG	4 cut(s)	36, 110, 122, 134
FatI	CATG	4 cut(s)	32, 106, 118, 130
FbaI	TGATCA	3 cut(s)	109, 127, 133
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	41, 162
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	36, 110, 122, 134
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	113, 119, 131
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	22, 46
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	65, 77, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	36, 110, 122, 134
Ksp22I	TGATCA	3 cut(s)	109, 127, 133
Kzo9I	GATC	4 cut(s)	109, 115, 127, 133
LpnPI	CCDG	2 cut(s)	44, 232
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	4 cut(s)	111, 117, 129, 135
MboI	GATC	4 cut(s)	109, 115, 127, 133
MboII	GAAGA	1 cut(s)	188
MluCI	AATT	1 cut(s)	235
MnlI	CCTC	2 cut(s)	31, 160
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	3 cut(s)	117, 123, 141
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	4 cut(s)	109, 115, 127, 133
NlaIII	CATG	4 cut(s)	36, 110, 122, 134
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	143
PagI	TCATGA	2 cut(s)	118, 130
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	103, 161
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	3 cut(s)	117, 123, 141
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	109, 115, 127, 133
Sau96I	GGNCC	2 cut(s)	103, 161
ScaI	AGTACT	1 cut(s)	19
SetI	ASST	1 cut(s)	76
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	3 cut(s)	117, 123, 141
Sse9I	AATT	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	22, 46
TaiI	ACGT	1 cut(s)	76
TasI	AATT	1 cut(s)	235
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.