Rmu_sc0005347.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005347.1
N/A
Physical Location & Seq
Forward (+)
5973 .. 6299
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgcttgactcaactggctttgaatatcatagttgggtcatggatgttgagaaccacctcacttcaaaagggatccttcccgtaattcaggcaccaaatcccgacctcttatttgagtgtacgactacgaataatgccaccgcactcatcttgataagacgccacatggataaatcattccgattggagtacatggcaatcaaggatgctagtgaattatgggttgcgctagaagagcgttttggtaatgttaaggataccctcctccctgacttgaaagttcaatggggcaatctacgattcgccgattacaagtctgtagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

5.24

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 1 cut(s) 141
AclWI GGATC 2 cut(s) 67, 80
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 121, 191
AgsI TTSAA 4 cut(s) 23, 66, 277, 284
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
AlwI GGATC 2 cut(s) 67, 80
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspLEI GCGC 1 cut(s) 229
BamHI GGATCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 91
BciVI GTATCC 1 cut(s) 250
BfaI CTAG 2 cut(s) 210, 230
BfmI CTRYAG 1 cut(s) 318
BfuI GTATCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 74, 93
BmsI GCATC 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 49, 211
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 74, 93
BspPI GGATC 2 cut(s) 67, 80
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 49, 211
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuI GTATCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 49, 211
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 120, 190
CviAII CATG 3 cut(s) 40, 166, 193
CviJI RGCY 2 cut(s) 18, 323
CviKI_1 RGCY 2 cut(s) 18, 323
CviQI GTAC 2 cut(s) 120, 190
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
FaeI CATG 3 cut(s) 43, 169, 196
FaiI YATR 5 cut(s) 30, 41, 167, 194, 220
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 3 cut(s) 39, 165, 192
FokI GGATG 2 cut(s) 56, 218
FspBI CTAG 2 cut(s) 210, 230
GlaI GCGC 1 cut(s) 228
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 3 cut(s) 43, 169, 196
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 8, 300
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 101, 151
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 43, 169, 196
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 2 cut(s) 74, 282
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 210, 230
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 72
MluCI AATT 2 cut(s) 84, 215
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 68, 116, 272, 275
MseI TTAA 2 cut(s) 252, 325
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 1 cut(s) 72
NlaIII CATG 3 cut(s) 43, 169, 196
NlaIV GGNNCC 2 cut(s) 74, 93
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 300
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspN4I GGNNCC 2 cut(s) 74, 93
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 2 cut(s) 121, 191
RsaNI GTAC 2 cut(s) 120, 190
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 252, 325
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 2
SetI ASST 3 cut(s) 60, 108, 325
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 84, 215
SsiI CCGC 1 cut(s) 141
SspMI CTAG 2 cut(s) 210, 230
TasI AATT 2 cut(s) 84, 215
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 2 cut(s) 252, 325
Tru9I TTAA 2 cut(s) 252, 325
XspI CTAG 2 cut(s) 210, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.