Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005365.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56302 .. 59311

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggaggaggccgtaccgttcaagaacctcaacagcagagagtaccacggccacgagaagaaggtgcactctgtggcttggaactgcaccggcacaaagctcgcatcgggttccgtggaccaaaccgctcggatttggcacattgagcctcacggacatagtaagcctaaaggtgtggaattgagggggcacacggatagtgtggatcaactgtgttgggatcccaagcatgctgatttggttgccactgcctccggtgacaaaaccgttcggctatgggatgcgcggactgggaagtgtgcgcagctagcggagcttagtggtgaaaacattaacattacatataagccggacgggacgcacattgctgttggtaatagggacgatgaactaacgattttggatgttcggaaatttaagccaattcacaagaggaagttcaattatgaggacgatgaactgacgattttggatgttcggaaatttaagccaattcacaagaggaagttcaattatgaggttaatgaaattgcttggaacacaacaagtgatattttcttcttgacgactggaaatggcaccgttgaagtactatcatacccatctcttaaaccagtggacactctaatggctcatacagctggttgctattgcattgcaattgacccatgtggaagatattttgctgttgggagtgccgattccctggtcagcttgtgggatatctcagagatgctctgtgtgcgaacatttacaaaacttgaatcgcctgtgagaacaataagcttcaaccatactggagagtatcttgcttgtgccagtgaagactggtttattgatatagtaagtatcttaaagggcttactctgtcattcagcttttgaagagcagtattctcccttatggaagagagctcgactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

307

Amino Acids

34.73

Weight (kDa)

6.39

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	11 - 146	6.3e-13	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	12 - 138	3.5e-08	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	12 - 102	7.8e-16	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	13 - 108	4.7e-06	TEP-1 second beta-propeller
WD40	PF00400	13 - 46	4.5e-08	WD domain, G-beta repeat
WD40_Prp19	PF24814	13 - 143	7.3e-19	Prp19 WD40 domain
WDR55	PF24796	13 - 155	8.8e-09	WDR55
Beta-prop_WDR3_1st	PF25173	14 - 134	3.2e-19	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	15 - 102	1.4e-12	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	15 - 131	8.9e-07	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	16 - 141	8.8e-21	WDR5 beta-propeller domain
EIF3I	PF24805	16 - 126	5.3e-09	EIF3I
Beta-prop_THOC3	PF25174	18 - 153	5.9e-53	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	19 - 181	6.6e-09	Aladin seven-bladed propeller
WD40	PF00400	60 - 94	1.8e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	61 - 146	1.8e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2	PF23414	71 - 146	1e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML_2	PF23414	150 - 285	6.9e-15	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	150 - 240	7.8e-09	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	150 - 292	5.6e-54	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	151 - 275	2.9e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	151 - 297	4.5e-18	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	158 - 284	5.1e-11	WDR3 first beta-propeller domain
EIF3I	PF24805	163 - 276	6.7e-09	EIF3I
WD40_Prp19	PF24814	169 - 279	3.2e-13	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	177 - 284	1.7e-13	WDHD1 first WD40 domain
WD40	PF00400	204 - 241	8.2e-08	WD domain, G-beta repeat
WD40_Gbeta	PF25391	207 - 277	5.7e-09	G protein beta WD-40 repeat protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	286
AciI	CCGC	3 cut(s)	126, 286, 311
AclWI	GGATC	3 cut(s)	213, 215, 228
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	413, 482
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	3 cut(s)	15, 44, 591
AgsI	TTSAA	7 cut(s)	22, 442, 511, 587, 764, 790, 884
AjnI	CCWGG	1 cut(s)	705
AluBI	AGCT	8 cut(s)	100, 307, 316, 641, 714, 786, 878, 914
AluI	AGCT	8 cut(s)	100, 307, 316, 641, 714, 786, 878, 914
Alw21I	GWGCWC	2 cut(s)	69, 916
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	3 cut(s)	213, 215, 228
AoxI	GGCC	2 cut(s)	9, 49
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	2 cut(s)	413, 482
AspLEI	GCGC	2 cut(s)	286, 304
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	269, 335
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	69, 192
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	916
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	69, 916
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	707
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	112, 222, 580
BmrFI	CCNGG	1 cut(s)	707
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	113, 271, 723
BmtI	GCTAGC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	46, 114, 705
BsaWI	WCCGGW	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	6 cut(s)	295, 574, 614, 802, 819, 833
Bse3DI	GCAATG	2 cut(s)	363, 654
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	46, 114, 705
BseGI	GGATG	3 cut(s)	286, 409, 478
BseMI	GCAATG	2 cut(s)	363, 654
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	6 cut(s)	295, 574, 614, 802, 819, 833
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	69, 192
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	11, 51
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	69, 916
BsiSI	CCGG	3 cut(s)	90, 255, 350
BslFI	GGGAC	2 cut(s)	370, 395
BsmFI	GGGAC	2 cut(s)	370, 395
BsnI	GGCC	2 cut(s)	11, 51
Bsp1286I	GDGCHC	3 cut(s)	69, 192, 916
Bsp143I	GATC	2 cut(s)	205, 220
BspACI	CCGC	3 cut(s)	126, 286, 311
BspANI	GGCC	2 cut(s)	11, 51
BspCNI	CTCAG	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	112, 222, 580
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	213, 215, 228
BspQI	GCTCTTC	1 cut(s)	879
BspT107I	GGYRCC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	363, 654
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	6 cut(s)	295, 574, 614, 802, 819, 833
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	46, 114, 705
BssMI	GATC	2 cut(s)	205, 220
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	4 cut(s)	18, 213, 268, 583
Bst6I	CTCTTC	2 cut(s)	879, 902
BstC8I	GCNNGC	3 cut(s)	102, 231, 309
BstDEI	CTNAG	2 cut(s)	317, 727
BstDSI	CCRYGG	2 cut(s)	46, 114
BstF5I	GGATG	3 cut(s)	286, 409, 478
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	286, 304
BstKTI	GATC	2 cut(s)	208, 223
BstMBI	GATC	2 cut(s)	205, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 308, 313, 638, 742
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	705
BstSLI	GKGCMC	2 cut(s)	69, 192
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	11, 51
BtgI	CCRYGG	2 cut(s)	46, 114
BtsCI	GGATG	3 cut(s)	286, 409, 478
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 621, 826
Cac8I	GCNNGC	3 cut(s)	102, 231, 309
CfoI	GCGC	2 cut(s)	286, 304
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	14, 43, 590
CviAII	CATG	2 cut(s)	230, 669
CviQI	GTAC	3 cut(s)	14, 43, 590
DdeI	CTNAG	2 cut(s)	317, 727
DpnI	GATC	2 cut(s)	207, 222
DpnII	GATC	2 cut(s)	205, 220
DraIII	CACNNNGTG	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	879, 902
EarI	CTCTTC	2 cut(s)	879, 902
Ecl136II	GAGCTC	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	916
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	914
EcoICRI	GAGCTC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	705
EcoRV	GATATC	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	916
FaeI	CATG	2 cut(s)	233, 672
FaqI	GGGAC	2 cut(s)	370, 395
FatI	CATG	2 cut(s)	229, 668
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	3 cut(s)	293, 416, 485
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	308
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	285, 303
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	11, 51
HapII	CCGG	3 cut(s)	90, 255, 350
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	2 cut(s)	286, 304
Hin1II	CATG	2 cut(s)	233, 672
Hin6I	GCGC	2 cut(s)	284, 302
HinP1I	GCGC	2 cut(s)	284, 302
HindIII	AAGCTT	1 cut(s)	784
HinfI	GANTC	2 cut(s)	701, 764
HpaII	CCGG	3 cut(s)	90, 255, 350
HphI	GGTGA	2 cut(s)	269, 335
Hpy166II	GTNNAC	3 cut(s)	67, 118, 619
Hpy188I	TCNGA	4 cut(s)	132, 411, 480, 730
Hpy188III	TCNNGA	2 cut(s)	22, 562
Hpy8I	GTNNAC	3 cut(s)	67, 118, 619
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	4 cut(s)	18, 213, 268, 583
HpyCH4V	TGCA	4 cut(s)	67, 87, 654, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 308, 313, 638, 742
HpyF3I	CTNAG	2 cut(s)	317, 727
Hsp92II	CATG	2 cut(s)	233, 672
HspAI	GCGC	2 cut(s)	284, 302
Kzo9I	GATC	2 cut(s)	205, 220
LguI	GCTCTTC	1 cut(s)	879
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	3 cut(s)	113, 271, 723
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	207, 222
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	2 cut(s)	205, 220
MboII	GAAGA	6 cut(s)	70, 550, 687, 836, 896, 919
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	3 cut(s)	69, 192, 916
MluCI	AATT	9 cut(s)	179, 413, 423, 442, 482, 492, 511, 528, 660
MnlI	CCTC	8 cut(s)	38, 159, 177, 262, 426, 442, 495, 511
MseI	TTAA	6 cut(s)	333, 417, 486, 522, 609, 854
MslI	CAYNNNNRTG	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	3 cut(s)	90, 255, 350
MspR9I	CCNGG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	707
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	5 cut(s)	145, 308, 313, 638, 742
NdeII	GATC	2 cut(s)	205, 220
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	233, 672
NlaIV	GGNNCC	3 cut(s)	112, 222, 580
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	701, 764
PkrI	GCNGC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	916
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	112, 222, 580
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	3 cut(s)	15, 44, 591
RsaNI	GTAC	3 cut(s)	14, 43, 590
RseI	CAYNNNNRTG	1 cut(s)	626
SacI	GAGCTC	1 cut(s)	916
SapI	GCTCTTC	1 cut(s)	879
SaqAI	TTAA	6 cut(s)	333, 417, 486, 522, 609, 854
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	205, 220
Sau96I	GGNCC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	591
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	3 cut(s)	69, 192, 916
SfaNI	GCATC	3 cut(s)	113, 271, 723
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	9 cut(s)	179, 413, 423, 442, 482, 492, 511, 528, 660
SsiI	CCGC	3 cut(s)	126, 286, 311
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	1 cut(s)	705
TaaI	ACNGT	4 cut(s)	18, 213, 268, 583
TaqI	TCGA	1 cut(s)	916
TasI	AATT	9 cut(s)	179, 413, 423, 442, 482, 492, 511, 528, 660
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	2 cut(s)	701, 764
Tru1I	TTAA	6 cut(s)	333, 417, 486, 522, 609, 854
Tru9I	TTAA	6 cut(s)	333, 417, 486, 522, 609, 854
TscAI	CASTG	3 cut(s)	253, 621, 826
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	402, 471, 540
TspGWI	ACGGA	3 cut(s)	103, 168, 209
TspRI	CASTG	3 cut(s)	253, 621, 826
VneI	GTGCAC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	413, 482
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.