Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005375.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56427 .. 58230

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcaaaacctcagcccgccaccgagcccaaccaccagccagagaacgaggagttagcctctctgagaaaaaaggcggcgaagaaagaagcggccaagctcaagaagctccgtcgcagccaagagcaaaaagcggcagccgccgcggttcgcgctcagtctgccgagccagaggacccactcgctgcgaactacggtgacgtgccgctcattcagccccaaccgaagaagatagccgacgtcaacgacaagaaggagataggagctctgaacgaggcattgaaggaccagaaggttctgatacgcggccatgcacagacgatccgagcgtcgggaagaacatggcatttattgtggtacggtcagaaagaaggggtggttcacggttcagtgcgtggtgacggttcaaccggagattgtgagccgtcagacgatcacccgttctcgattaccgacgtagacataatgatggagacctcctacaccgtcaacaacaaacctccaatcaaagagatcgctctcgacatcgcccttctcgtcaccagaaacctcggcattgtcgtaggcaccttcctggcctataaccgtgtcggcagcaacaaagctcacgataccctaatgccacccttctactgccctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

214

Amino Acids

23.49

Weight (kDa)

8.43

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	566
AccBSI	CCGCTC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	3 cut(s)	146, 153, 306
AciI	CCGC	9 cut(s)	18, 77, 92, 134, 141, 144, 146, 206, 306
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	2 cut(s)	93, 307
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	283, 408
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	100, 109, 266, 605
AluI	AGCT	4 cut(s)	100, 109, 266, 605
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	3 cut(s)	93, 307, 576
ApeKI	GCWGC	4 cut(s)	117, 137, 185, 594
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	175, 286
AsuHPI	GGTGA	4 cut(s)	209, 410, 428, 532
AvaII	GGWCC	2 cut(s)	175, 286
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	2 cut(s)	30, 268
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	129, 149, 172, 606
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	175, 286
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	175, 286
BmiI	GGNNCC	2 cut(s)	177, 568
BmrFI	CCNGG	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	144, 550
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	144, 550
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	26, 56, 170
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	129, 149, 172, 606
Bsh1236I	CGCG	3 cut(s)	146, 153, 306
BshFI	GGCC	3 cut(s)	95, 309, 578
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	95, 309, 578
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	30, 268
Bsp143I	GATC	3 cut(s)	321, 433, 513
BspACI	CCGC	9 cut(s)	18, 77, 92, 134, 141, 144, 146, 206, 306
BspANI	GGCC	3 cut(s)	95, 309, 578
BspCNI	CTCAG	3 cut(s)	25, 57, 169
BspFNI	CGCG	3 cut(s)	146, 153, 306
BspLI	GGNNCC	2 cut(s)	177, 568
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	144, 550
BssMI	GATC	3 cut(s)	321, 433, 513
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	6 cut(s)	197, 362, 386, 404, 487, 587
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	12, 65, 156
BstDSI	CCRYGG	1 cut(s)	144
BstFNI	CGCG	3 cut(s)	146, 153, 306
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	324, 436, 516
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	3 cut(s)	321, 433, 513
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 140, 143, 152, 161, 214
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstUI	CGCG	3 cut(s)	146, 153, 306
BstV1I	GCAGC	4 cut(s)	129, 149, 172, 606
BsuRI	GGCC	3 cut(s)	95, 309, 578
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	511
BtrI	CACGTC	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	175, 286
Cfr42I	CCGCGG	1 cut(s)	147
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	311, 342
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	12, 65, 156
DpnI	GATC	3 cut(s)	323, 435, 515
DpnII	GATC	3 cut(s)	321, 433, 513
EaeI	YGGCCR	2 cut(s)	93, 307
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	30, 268
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	175, 286
Eco53kI	GAGCTC	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	573
EcoT38I	GRGCYC	2 cut(s)	30, 268
FaeI	CATG	2 cut(s)	314, 345
FaiI	YATR	4 cut(s)	312, 343, 464, 582
FatI	CATG	2 cut(s)	310, 341
FauI	CCCGC	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	459
FriOI	GRGCYC	2 cut(s)	30, 268
GlaI	GCGC	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	95, 309, 578
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	314, 345
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	2 cut(s)	244, 490
HindII	GTYRAC	2 cut(s)	244, 490
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	4 cut(s)	209, 410, 428, 532
Hpy166II	GTNNAC	4 cut(s)	244, 382, 460, 490
Hpy188I	TCNGA	6 cut(s)	66, 270, 300, 326, 366, 430
Hpy188III	TCNNGA	5 cut(s)	103, 333, 445, 521, 608
Hpy8I	GTNNAC	4 cut(s)	244, 382, 460, 490
Hpy99I	CGWCG	4 cut(s)	117, 242, 334, 458
HpyAV	CCTTC	7 cut(s)	247, 277, 286, 365, 542, 580, 637
HpyCH4III	ACNGT	6 cut(s)	197, 362, 386, 404, 487, 587
HpyCH4IV	ACGT	3 cut(s)	201, 240, 456
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 140, 143, 152, 161, 214
HpyF3I	CTNAG	3 cut(s)	12, 65, 156
HpySE526I	ACGT	3 cut(s)	201, 240, 456
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	314, 345
HspAI	GCGC	1 cut(s)	153
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	321, 433, 513
LmnI	GCTCC	2 cut(s)	114, 263
LpnPI	CCDG	8 cut(s)	50, 54, 183, 302, 424, 556, 560, 587
Lsp1109I	GCAGC	4 cut(s)	129, 149, 172, 606
MaeII	ACGT	3 cut(s)	201, 240, 456
MaeIII	GTNAC	3 cut(s)	197, 398, 538
MalI	GATC	3 cut(s)	323, 435, 515
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	3 cut(s)	321, 433, 513
MboII	GAAGA	4 cut(s)	94, 238, 241, 348
MhlI	GDGCHC	2 cut(s)	30, 268
MnlI	CCTC	8 cut(s)	21, 43, 70, 166, 268, 487, 510, 560
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	3 cut(s)	146, 153, 306
MwoI	GCNNNNNNNGC	6 cut(s)	106, 140, 143, 152, 161, 214
NdeII	GATC	3 cut(s)	321, 433, 513
NlaIII	CATG	2 cut(s)	314, 345
NlaIV	GGNNCC	2 cut(s)	177, 568
NmeAIII	GCCGAG	2 cut(s)	190, 531
NmuCI	GTSAC	3 cut(s)	197, 398, 538
PcsI	WCGNNNNNNNCGW	3 cut(s)	326, 534, 558
PpuMI	RGGWCCY	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	177, 568
PspPI	GGNCC	2 cut(s)	175, 286
PspPPI	RGGWCCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	321, 433, 513
Sau96I	GGNCC	2 cut(s)	175, 286
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	2 cut(s)	30, 268
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	175, 286
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	9 cut(s)	18, 77, 92, 134, 141, 144, 146, 206, 306
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	6 cut(s)	197, 362, 386, 404, 487, 587
TaiI	ACGT	3 cut(s)	204, 243, 459
TaqI	TCGA	2 cut(s)	446, 522
TauI	GCSGC	7 cut(s)	80, 95, 137, 143, 146, 208, 309
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	3 cut(s)	197, 398, 538
TseI	GCWGC	4 cut(s)	117, 137, 185, 594
Tsp45I	GTSAC	3 cut(s)	197, 398, 538
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	175, 286
XmiI	GTMKAC	1 cut(s)	459
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.