Rmu_sc0005406.1_g000009

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005406.1
N/A
Physical Location & Seq
Forward (+)
78580 .. 82712
4133 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
atgcgaattcagactgaggccaagatatggattgagattgagaccgagatagtttggctggaatgggcaccacagtgcctagcacagcacacaagactccagtgcagcctctgcaaacccaacgcacgcacagcctcgctacctaaccccaccaccgagcccagatcggcctcactgcccagaccaccccacgcctacaacaccggcagatccaccattccagccggcctcaacccgccgaatccttctctccttcaccgcccagcgtccccgcgactgcgcaccgcagccccgctcatcctcccggccacaaagcctcacaaaccgagcgccatccaccaatctcgacctcgaaccagatttcctgcagcacaacaccacgttcaggccagccttgcagagcccatccccgcgtatgctgggatgaccacctatgcaggcttcaatgaagtttgttctcctaagaaaggagaatatgtcttcatttcagcagcatcaggtgccgctggccagctggttggacaattagcaaaattgttgggttgttatgttgttggaactgctggaagtaaagaaaaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

194

Amino Acids

20.92

Weight (kDa)

9.82

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 281
AccB1I GGYRCC 2 cut(s) 67, 500
AccB7I CCANNNNNTGG 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 2 cut(s) 274, 413
AciI CCGC 7 cut(s) 236, 259, 272, 285, 293, 411, 504
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 306, 508
AcsI RAATTY 1 cut(s) 6
AfiI CCNNNNNNNGG 3 cut(s) 27, 385, 467
AgsI TTSAA 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 73
AloI GAACNNNNNNTCC 2 cut(s) 346, 378
AluBI AGCT 1 cut(s) 514
AluI AGCT 1 cut(s) 514
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 111
AoxI GGCC 6 cut(s) 18, 168, 226, 306, 387, 508
ApeKI GCWGC 4 cut(s) 105, 287, 368, 491
ApoI RAATTY 1 cut(s) 6
AspLEI GCGC 2 cut(s) 282, 332
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 2 cut(s) 67, 500
BanII GRGCYC 2 cut(s) 162, 405
BbsI GAAGAC 1 cut(s) 472
BbvI GCAGC 4 cut(s) 117, 299, 380, 503
BccI CCATC 2 cut(s) 341, 413
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 5 cut(s) 106, 288, 369, 492, 504
BlsI GCNGC 5 cut(s) 107, 289, 370, 493, 505
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 69, 502
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 385, 467
Bse118I RCCGGY 2 cut(s) 203, 224
Bse1I ACTGG 1 cut(s) 100
BseGI GGATG 4 cut(s) 297, 333, 405, 429
BseLI CCNNNNNNNGG 3 cut(s) 27, 385, 467
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 4 cut(s) 117, 299, 380, 503
BseYI CCCAGC 2 cut(s) 262, 419
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 2 cut(s) 274, 413
BshFI GGCC 6 cut(s) 20, 170, 228, 308, 389, 510
BshNI GGYRCC 2 cut(s) 67, 500
BsiSI CCGG 3 cut(s) 204, 225, 305
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 27, 385, 467
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 6 cut(s) 20, 170, 228, 308, 389, 510
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 70, 162, 405
Bsp143I GATC 2 cut(s) 164, 209
BspACI CCGC 7 cut(s) 236, 259, 272, 285, 293, 411, 504
BspANI GGCC 6 cut(s) 20, 170, 228, 308, 389, 510
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 2 cut(s) 274, 413
BspLI GGNNCC 2 cut(s) 69, 502
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 67, 500
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 203, 224
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 2 cut(s) 203, 224
BssMI GATC 2 cut(s) 164, 209
Bst4CI ACNGT 1 cut(s) 75
BstAPI GCANNNNNTGC 2 cut(s) 111, 500
BstC8I GCNNGC 6 cut(s) 127, 226, 391, 439, 508, 512
BstDEI CTNAG 2 cut(s) 15, 462
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 4 cut(s) 297, 333, 405, 429
BstFNI CGCG 2 cut(s) 274, 413
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 282, 332
BstKTI GATC 2 cut(s) 167, 212
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 164, 209
BstMWI GCNNNNNNNGC 4 cut(s) 111, 131, 395, 500
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 274, 413
BstV1I GCAGC 4 cut(s) 117, 299, 380, 503
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 6 cut(s) 20, 170, 228, 308, 389, 510
BtsCI GGATG 4 cut(s) 297, 333, 405, 429
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 3 cut(s) 80, 107, 173
Cac8I GCNNGC 6 cut(s) 127, 226, 391, 439, 508, 512
CaiI CAGNNNCTG 1 cut(s) 111
CfoI GCGC 2 cut(s) 282, 332
Cfr10I RCCGGY 2 cut(s) 203, 224
CseI GACGC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 15, 462
DpnI GATC 2 cut(s) 166, 211
DpnII GATC 2 cut(s) 164, 209
EaeI YGGCCR 2 cut(s) 306, 508
Eco24I GRGCYC 2 cut(s) 162, 405
Eco31I GGTCTC 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 162, 405
FaiI YATR 6 cut(s) 28, 417, 435, 477, 549, 583
FaqI GGGAC 1 cut(s) 253
FauI CCCGC 4 cut(s) 243, 279, 300, 418
Fnu4HI GCNGC 5 cut(s) 106, 288, 369, 492, 504
FokI GGATG 4 cut(s) 284, 320, 392, 436
FriOI GRGCYC 2 cut(s) 162, 405
Fsp4HI GCNGC 5 cut(s) 106, 288, 369, 492, 504
FspBI CTAG 1 cut(s) 80
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 2 cut(s) 281, 331
GluI GCNGC 5 cut(s) 106, 288, 369, 492, 504
GsaI CCCAGC 2 cut(s) 266, 423
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 6 cut(s) 20, 170, 228, 308, 389, 510
HapII CCGG 3 cut(s) 204, 225, 305
HgaI GACGC 1 cut(s) 255
HhaI GCGC 2 cut(s) 282, 332
Hin6I GCGC 2 cut(s) 280, 330
HinP1I GCGC 2 cut(s) 280, 330
HinfI GANTC 2 cut(s) 96, 241
HpaII CCGG 3 cut(s) 204, 225, 305
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 255, 263
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 5 cut(s) 105, 114, 368, 398, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 131, 395, 500
HpyF3I CTNAG 2 cut(s) 15, 462
HpySE526I ACGT 1 cut(s) 381
HspAI GCGC 2 cut(s) 280, 330
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 164, 209
Lsp1109I GCAGC 4 cut(s) 117, 299, 380, 503
LweI GCATC 1 cut(s) 503
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 381
MalI GATC 2 cut(s) 166, 211
MbiI CCGCTC 1 cut(s) 295
MboI GATC 2 cut(s) 164, 209
MboII GAAGA 1 cut(s) 472
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 3 cut(s) 70, 162, 405
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 3 cut(s) 6, 524, 533
MluNI TGGCCA 1 cut(s) 510
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 499, 535
MnlI CCTC 8 cut(s) 10, 119, 145, 181, 239, 311, 327, 360
Mox20I TGGCCA 1 cut(s) 510
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 2 cut(s) 506, 514
MspI CCGG 3 cut(s) 204, 225, 305
MspR9I CCNGG 1 cut(s) 305
MvnI CGCG 2 cut(s) 274, 413
MwoI GCNNNNNNNGC 4 cut(s) 111, 131, 395, 500
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 164, 209
NgoMIV GCCGGC 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 69, 502
NsbI TGCGCA 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 27
PkrI GCNGC 5 cut(s) 107, 289, 370, 493, 505
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspFI CCCAGC 2 cut(s) 262, 419
PspN4I GGNNCC 2 cut(s) 69, 502
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 73
SatI GCNGC 5 cut(s) 106, 288, 369, 492, 504
Sau3AI GATC 2 cut(s) 164, 209
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 3 cut(s) 70, 162, 405
SetI ASST 7 cut(s) 145, 352, 384, 434, 502, 516, 582
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 3 cut(s) 6, 524, 533
SsiI CCGC 7 cut(s) 236, 259, 272, 285, 293, 411, 504
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 346, 352
TaqII GACCGA 1 cut(s) 59
TasI AATT 3 cut(s) 6, 524, 533
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 3 cut(s) 80, 107, 180
TseI GCWGC 4 cut(s) 105, 287, 368, 491
TspDTI ATGAA 2 cut(s) 462, 472
TspRI CASTG 3 cut(s) 80, 107, 180
Van91I CCANNNNNTGG 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 6
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.