Rmu_sc0005431.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005431.1
N/A
Physical Location & Seq
Reverse (-)
19466 .. 22305
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
atgactcgtcatatggatgattcgctccagtacgagtgtatgaataaggaagaccccagaaggctgtgggtctcactcgaagaaagatttagcaacgtccgtgactccctacttcctgacctagaagagagagggcatagcctccgcttctgtgatttcaagtcagttcttgactacaactcagaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgctttgatggatgctaagaactatcgaatcgatgatactgcaagatggatcacaaggtttctgagattagtggtacttaagcgagccttgctccaccgacatctctctactcacctgttcccacttctggggcttctgatgcttatttggcacggtgcatggtggcgcgtcagcggtgatctggggcgttgcagtcattgtgaaagtgaggcattgcctcgggaatcgccgttagcgagagtccctccgctgactataagtggcctgcaatgttgcgaggacctgtctagctgtagcctggtgaatggcattgcggtcagcgctcgcttgcaagatggaaaaggagaagtgccactagcggagttgcacttagaggagactatctcgcttgcaagatggaaagggagttctgctagcgaagttgcgtttagcggagactgtctcgcttgccagatggaaagggagaagttccgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

251

Amino Acids

28.66

Weight (kDa)

6.09

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 447
AciI CCGC 6 cut(s) 145, 453, 527, 593, 638, 711
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 2 cut(s) 32, 354
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 406, 407
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 576
AloI GAACNNNNNNTCC 2 cut(s) 670, 702
AluBI AGCT 1 cut(s) 570
AluI AGCT 1 cut(s) 570
Alw26I GTCTC 5 cut(s) 76, 280, 650, 708, 725
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 498
Aor51HI AGCGCT 1 cut(s) 601
AoxI GGCC 1 cut(s) 541
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 447, 602
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 383, 467, 592
AsuNHI GCTAGC 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 559
BbsI GAAGAC 2 cut(s) 57, 260
BccI CCATC 5 cut(s) 280, 318, 608, 669, 727
BceAI ACGGC 1 cut(s) 493
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 578
BcoDI GTCTC 5 cut(s) 76, 280, 650, 708, 725
BfaI CTAG 4 cut(s) 122, 567, 635, 693
BfmI CTRYAG 1 cut(s) 571
BfoI RGCGCY 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 559
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 3 cut(s) 226, 280, 408
BmtI GCTAGC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 57, 260
BplI GAGNNNNNCTC 8 cut(s) 354, 386, 508, 540, 647, 679, 705, 737
BpmI CTGGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 497
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 407
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 3 cut(s) 491, 554, 588
BseBI CCWGG 1 cut(s) 578
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 2 cut(s) 22, 295
BseLI CCNNNNNNNGG 2 cut(s) 406, 407
BseMI GCAATG 3 cut(s) 491, 554, 588
BseMII CTCAG 2 cut(s) 195, 332
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 1 cut(s) 543
BshVI ATCGAT 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 406, 407
BsmAI GTCTC 5 cut(s) 76, 280, 650, 708, 725
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 1 cut(s) 543
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 498
Bsp143I GATC 3 cut(s) 228, 327, 457
BspACI CCGC 6 cut(s) 145, 453, 527, 593, 638, 711
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 2 cut(s) 194, 333
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 1 cut(s) 447
BspOI GCTAGC 1 cut(s) 696
BspPI GGATC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 3 cut(s) 491, 554, 588
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 3 cut(s) 228, 327, 457
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 434, 719
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 7 cut(s) 363, 545, 604, 608, 669, 694, 727
BstDEI CTNAG 4 cut(s) 181, 294, 341, 649
BstF5I GGATG 2 cut(s) 22, 295
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 2 cut(s) 447, 602
BstKTI GATC 3 cut(s) 231, 330, 460
BstMAI GTCTC 5 cut(s) 76, 280, 650, 708, 725
BstMBI GATC 3 cut(s) 228, 327, 457
BstMWI GCNNNNNNNGC 4 cut(s) 367, 418, 427, 599
BstNI CCWGG 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 571
BstUI CGCG 1 cut(s) 447
BstV2I GAAGAC 2 cut(s) 57, 260
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 1 cut(s) 543
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 22, 295
Cac8I GCNNGC 7 cut(s) 363, 545, 604, 608, 669, 694, 727
CfoI GCGC 2 cut(s) 447, 602
Cfr13I GGNCC 1 cut(s) 559
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 436
Csp6I GTAC 2 cut(s) 31, 353
CviAII CATG 1 cut(s) 438
CviJI RGCY 7 cut(s) 64, 141, 365, 412, 543, 570, 576
CviKI_1 RGCY 7 cut(s) 64, 141, 365, 412, 543, 570, 576
CviQI GTAC 2 cut(s) 31, 353
DdeI CTNAG 4 cut(s) 181, 294, 341, 649
DpnI GATC 3 cut(s) 230, 329, 459
DpnII GATC 3 cut(s) 228, 327, 457
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 559
Eco47III AGCGCT 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 441
FaiI YATR 6 cut(s) 12, 14, 41, 138, 439, 536
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 506
FatI CATG 1 cut(s) 437
FauNDI CATATG 1 cut(s) 12
FokI GGATG 2 cut(s) 29, 302
FspBI CTAG 4 cut(s) 122, 567, 635, 693
GlaI GCGC 2 cut(s) 446, 601
GsuI CTGGAG 1 cut(s) 11
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 1 cut(s) 543
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 447, 602
Hin1II CATG 1 cut(s) 441
Hin6I GCGC 2 cut(s) 445, 600
HinP1I GCGC 2 cut(s) 445, 600
HinfI GANTC 7 cut(s) 4, 20, 104, 256, 306, 503, 519
HphI GGTGA 3 cut(s) 383, 467, 592
Hpy188I TCNGA 3 cut(s) 184, 342, 417
Hpy188III TCNNGA 3 cut(s) 116, 170, 500
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4III ACNGT 2 cut(s) 434, 719
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 320, 437, 471, 547, 610, 646, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 367, 418, 427, 599
HpyF3I CTNAG 4 cut(s) 181, 294, 341, 649
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 441
HspAI GCGC 2 cut(s) 445, 600
Kzo9I GATC 3 cut(s) 228, 327, 457
LmnI GCTCC 2 cut(s) 30, 375
LweI GCATC 3 cut(s) 226, 280, 408
MaeI CTAG 4 cut(s) 122, 567, 635, 693
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 230, 329, 459
MboI GATC 3 cut(s) 228, 327, 457
MboII GAAGA 4 cut(s) 62, 92, 137, 265
MluCI AATT 1 cut(s) 212
MlyI GAGTC 3 cut(s) 98, 250, 528
MnlI CCTC 7 cut(s) 125, 152, 481, 507, 534, 550, 646
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 198, 206, 357
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 2 cut(s) 453, 529
MspCI CTTAAG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 578
MvaI CCWGG 1 cut(s) 578
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 367, 418, 427, 599
NdeI CATATG 1 cut(s) 12
NdeII GATC 3 cut(s) 228, 327, 457
NheI GCTAGC 1 cut(s) 692
NlaIII CATG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 20, 306, 503
PleI GAGTC 3 cut(s) 98, 250, 527
PpsI GAGTC 3 cut(s) 98, 250, 527
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspPI GGNCC 1 cut(s) 559
PspPPI RGGWCCY 1 cut(s) 559
RsaI GTAC 2 cut(s) 32, 354
RsaNI GTAC 2 cut(s) 31, 353
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 3 cut(s) 198, 206, 357
Sau3AI GATC 3 cut(s) 228, 327, 457
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 3 cut(s) 98, 250, 528
ScrFI CCNGG 1 cut(s) 578
SetI ASST 7 cut(s) 99, 123, 269, 338, 396, 564, 572
SfaNI GCATC 3 cut(s) 226, 280, 408
SfcI CTRYAG 1 cut(s) 571
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 212
SsiI CCGC 6 cut(s) 145, 453, 527, 593, 638, 711
SspMI CTAG 4 cut(s) 122, 567, 635, 693
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 434, 719
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 78, 304, 309
TasI AATT 1 cut(s) 212
TfiI GAWTC 3 cut(s) 20, 306, 503
Tru1I TTAA 3 cut(s) 198, 206, 357
Tru9I TTAA 3 cut(s) 198, 206, 357
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 2 cut(s) 89, 740
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 4 cut(s) 122, 567, 635, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.