Rmu_sc0005439.1_g000001

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005439.1
N/A
Physical Location & Seq
Reverse (-)
1402 .. 2076
675 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atggaagtagacattggatcagttggggcacgggccgagaaggtagcaaaaaaaagtgttgtcaagggaggtgggcaggttgggctagaagaggttactgacgtacaggggggccttcaacaggccaggttggcccctgactctcccaggcctggtactaagaagggaggcagtaagaagaagagagtggtggtggctgcaaagactcccaaagtttctggcatgagctatggacttgctccgaagagtccacccttaacattctggactcgaaaaaaaaaatgtgggttgattgaaggaattgcagactttgtgaggttgaaggctgggtatgcaccgagtcactgggttaagcaaggtcaaggacataggtgggatcagggttatgatgttactgctagggttttggattactgtactagtttgaaagatgggtttgttgcagagttgaacaacaggttgaagactggttatagtgtaaactactttgctaatattttgggcaaacaaggtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

172

Amino Acids

18.51

Weight (kDa)

9.94

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 92 - 170 2.4e-30 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 9
AclWI GGATC 2 cut(s) 25, 384
AfaI GTAC 3 cut(s) 105, 157, 418
AfiI CCNNNNNNNGG 2 cut(s) 121, 152
AgsI TTSAA 6 cut(s) 119, 296, 322, 427, 451, 463
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 3 cut(s) 125, 146, 151
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AlwI GGATC 2 cut(s) 25, 384
AoxI GGCC 5 cut(s) 33, 112, 123, 132, 149
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 33, 112, 133
BaeGI GKGCMC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 3 cut(s) 127, 148, 153
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 86, 399, 420
BfuAI ACCTGC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 127, 148, 153
BmgT120I GGNCC 3 cut(s) 33, 112, 133
BmiI GGNNCC 2 cut(s) 113, 135
BmrFI CCNGG 3 cut(s) 127, 148, 153
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 152
Bse1I ACTGG 2 cut(s) 350, 472
BseBI CCWGG 3 cut(s) 127, 148, 153
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 121, 152
BseNI ACTGG 2 cut(s) 350, 472
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 5 cut(s) 35, 114, 125, 134, 151
BslI CCNNNNNNNGG 2 cut(s) 121, 152
BsnI GGCC 5 cut(s) 35, 114, 125, 134, 151
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 17, 376
BspANI GGCC 5 cut(s) 35, 114, 125, 134, 151
BspLI GGNNCC 2 cut(s) 113, 135
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 2 cut(s) 25, 384
BsrI ACTGG 2 cut(s) 350, 472
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 17, 376
Bst2UI CCWGG 3 cut(s) 127, 148, 153
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 3 cut(s) 84, 176, 239
BstDEI CTNAG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 119
BstKTI GATC 2 cut(s) 20, 379
BstMBI GATC 2 cut(s) 17, 376
BstMWI GCNNNNNNNGC 3 cut(s) 82, 131, 332
BstNI CCWGG 3 cut(s) 127, 148, 153
BstSCI CCNGG 3 cut(s) 125, 146, 151
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 470
BsuRI GGCC 5 cut(s) 35, 114, 125, 134, 151
BtsIMutI CAGTG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 33, 112, 133
Csp6I GTAC 3 cut(s) 104, 156, 417
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 223
CviJI RGCY 9 cut(s) 35, 85, 114, 125, 134, 151, 197, 228, 326
CviKI_1 RGCY 9 cut(s) 35, 85, 114, 125, 134, 151, 197, 228, 326
CviQI GTAC 3 cut(s) 104, 156, 417
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 19, 378
DpnII GATC 2 cut(s) 17, 376
Eam1104I CTCTTC 3 cut(s) 84, 176, 239
EarI CTCTTC 3 cut(s) 84, 176, 239
Eco147I AGGCCT 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 125, 146, 151
FaeI CATG 1 cut(s) 226
FaiI YATR 6 cut(s) 224, 231, 333, 369, 387, 474
FatI CATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 86, 399, 420
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 5 cut(s) 35, 114, 125, 134, 151
Hin1II CATG 1 cut(s) 226
HinfI GANTC 5 cut(s) 140, 205, 247, 268, 340
Hpy166II GTNNAC 3 cut(s) 10, 251, 481
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 3 cut(s) 10, 251, 481
HpyAV CCTTC 5 cut(s) 34, 125, 157, 290, 316
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 200, 305, 335, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 131, 332
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 2 cut(s) 17, 376
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 3 cut(s) 86, 399, 420
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 94, 341, 391
MalI GATC 2 cut(s) 19, 378
MboI GATC 2 cut(s) 17, 376
MboII GAAGA 5 cut(s) 101, 190, 193, 256, 475
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 300, 514
MlyI GAGTC 5 cut(s) 134, 199, 256, 262, 349
MnlI CCTC 4 cut(s) 62, 85, 161, 309
MseI TTAA 2 cut(s) 257, 351
MspR9I CCNGG 3 cut(s) 127, 148, 153
MvaI CCWGG 3 cut(s) 127, 148, 153
MwoI GCNNNNNNNGC 3 cut(s) 82, 131, 332
NdeII GATC 2 cut(s) 17, 376
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 113, 135
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 341
PceI AGGCCT 1 cut(s) 151
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 5 cut(s) 134, 199, 255, 262, 348
PpsI GAGTC 5 cut(s) 134, 199, 255, 262, 348
Psp6I CCWGG 3 cut(s) 125, 146, 151
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 3 cut(s) 125, 146, 151
PspN4I GGNNCC 2 cut(s) 113, 135
PspPI GGNCC 3 cut(s) 33, 112, 133
RsaI GTAC 3 cut(s) 105, 157, 418
RsaNI GTAC 3 cut(s) 104, 156, 417
SaqAI TTAA 2 cut(s) 257, 351
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 17, 376
Sau96I GGNCC 3 cut(s) 33, 112, 133
SchI GAGTC 5 cut(s) 134, 199, 256, 262, 349
ScrFI CCNGG 3 cut(s) 127, 148, 153
SduI GDGCHC 1 cut(s) 31
SfiI GGCCNNNNNGGCC 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 2 cut(s) 300, 514
SseBI AGGCCT 1 cut(s) 151
SspI AATATT 1 cut(s) 496
SspMI CTAG 3 cut(s) 86, 399, 420
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 125, 146, 151
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 300, 514
TatI WGTACW 1 cut(s) 416
Tru1I TTAA 2 cut(s) 257, 351
Tru9I TTAA 2 cut(s) 257, 351
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 341
TspRI CASTG 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 3 cut(s) 86, 399, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.