Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005458.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1872

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

cttggaggccctgataaagtagctgaaatgacaggaaggcgaggtatgcttgtgagggcatctaatggtaaaggtgttacctatcaggctcgtaacacgaaggaggtttccatggagatggtcaacatgcatgagaaacagcttttcatggatggcaaaaagtttgtcgctataatttctgaggctgggtcagctggtgtttctttgcaggcagatagaagagctgtaaatcagaaaagaagggtacatctaaccctggaacttccttggagtgccgatcgagcgattcaacagtttggaagaactcaccggtcaaatcaagcttctgctcctgaatacaggctactctttactaacctcggtggagaacgtcggtttgcatccattgttgcaaagagattacaatctcttggagctctaactcagggtgatcgcagggcaggcccatcattgagtgcctataattatgatagtgcgtatggaaagaaggcattaatattgatgtatagaggaatattggagcaggaagctctgcctgttgtaccaccaggatgttcatctgaagacccggagacaatccaagattttattgaggaggcaagagctgctcttgtgtttgtaggaataattagggatggtaatctttctaagaacatttatatcttatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

223

Amino Acids

24.59

Weight (kDa)

9.71

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_4	PF13871	1 - 212	1.9e-84	C-terminal domain on Strawberry notch homologue

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	246, 543
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	255, 547
AluBI	AGCT	8 cut(s)	23, 142, 194, 224, 323, 416, 530, 605
AluI	AGCT	8 cut(s)	23, 142, 194, 224, 323, 416, 530, 605
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	566
AoxI	GGCC	2 cut(s)	7, 442
ApeKI	GCWGC	1 cut(s)	605
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	8, 443
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	299, 440
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	4 cut(s)	112, 146, 454, 629
BciT130I	CCWGG	2 cut(s)	257, 549
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	3 cut(s)	257, 549, 569
BmgT120I	GGNCC	2 cut(s)	8, 443
BmrFI	CCNGG	3 cut(s)	257, 549, 569
BmsI	GCATC	2 cut(s)	68, 389
BpiI	GAAGAC	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	569
BsaBI	GATNNNNATC	3 cut(s)	403, 556, 639
BsaJI	CCNNGG	4 cut(s)	111, 255, 266, 358
BsaWI	WCCGGW	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	309
Bse8I	GATNNNNATC	3 cut(s)	403, 556, 639
BseBI	CCWGG	2 cut(s)	257, 549
BseDI	CCNNGG	4 cut(s)	111, 255, 266, 358
BseGI	GGATG	4 cut(s)	157, 380, 557, 640
BseJI	GATNNNNATC	3 cut(s)	403, 556, 639
BseMII	CTCAG	2 cut(s)	171, 437
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	9, 444
BshTI	ACCGGT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	310, 569
BsmAI	GTCTC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	9, 444
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	277, 430
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	2 cut(s)	9, 444
BspCNI	CTCAG	2 cut(s)	172, 436
BspQI	GCTCTTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	111, 255, 266, 358
BssMI	GATC	2 cut(s)	277, 430
BssT1I	CCWWGG	2 cut(s)	111, 266
Bst2UI	CCWGG	2 cut(s)	257, 549
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	210, 442
BstDEI	CTNAG	3 cut(s)	180, 423, 648
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	157, 380, 557, 640
BstKTI	GATC	2 cut(s)	280, 433
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	277, 430
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 191, 281, 441, 605
BstNI	CCWGG	2 cut(s)	257, 549
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	255, 547, 567
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	570
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	9, 444
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	157, 380, 557, 640
Cac8I	GCNNGC	2 cut(s)	210, 442
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	8, 443
Csp6I	GTAC	2 cut(s)	245, 542
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	4 cut(s)	112, 127, 131, 148
CviQI	GTAC	2 cut(s)	245, 542
DdeI	CTNAG	3 cut(s)	180, 423, 648
DpnI	GATC	2 cut(s)	279, 432
DpnII	GATC	2 cut(s)	277, 430
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	111, 266
Eco24I	GRGCYC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	255, 547
EcoT14I	CCWWGG	2 cut(s)	111, 266
EcoT22I	ATGCAT	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	111, 266
FaeI	CATG	4 cut(s)	115, 130, 134, 151
FatI	CATG	4 cut(s)	111, 126, 130, 147
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	4 cut(s)	164, 367, 564, 647
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	606
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	9, 444
HapII	CCGG	2 cut(s)	310, 569
Hin1II	CATG	4 cut(s)	115, 130, 134, 151
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	310, 569
HphI	GGTGA	2 cut(s)	299, 440
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	181, 234, 562
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	4 cut(s)	30, 94, 234, 481
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	130, 208, 380, 392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 191, 281, 441, 605
HpyF3I	CTNAG	3 cut(s)	180, 423, 648
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	115, 130, 134, 151
Kzo9I	GATC	2 cut(s)	277, 430
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	334, 413, 520
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	2 cut(s)	68, 389
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	76, 92
MalI	GATC	2 cut(s)	279, 432
MboI	GATC	2 cut(s)	277, 430
MboII	GAAGA	3 cut(s)	231, 312, 575
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	174, 463, 627
MnlI	CCTC	8 cut(s)	35, 48, 97, 175, 368, 503, 586, 589
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	2 cut(s)	116, 550
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	310, 569
MspR9I	CCNGG	3 cut(s)	257, 549, 569
MvaI	CCWGG	2 cut(s)	257, 549
MwoI	GCNNNNNNNGC	5 cut(s)	46, 191, 281, 441, 605
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	277, 430
NlaIII	CATG	4 cut(s)	115, 130, 134, 151
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	607
Ple19I	CGATCG	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	255, 547
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	255, 547
PspPI	GGNCC	2 cut(s)	8, 443
PvuI	CGATCG	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	246, 543
RsaNI	GTAC	2 cut(s)	245, 542
RseI	CAYNNNNRTG	2 cut(s)	116, 550
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	277, 430
Sau96I	GGNCC	2 cut(s)	8, 443
ScrFI	CCNGG	3 cut(s)	257, 549, 569
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	68, 389
SmiMI	CAYNNNNRTG	2 cut(s)	116, 550
Sse9I	AATT	3 cut(s)	174, 463, 627
SspI	AATATT	2 cut(s)	498, 516
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	255, 547, 567
StyI	CCWWGG	2 cut(s)	111, 266
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	174, 463, 627
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	2 cut(s)	136, 546
VspI	ATTAAT	1 cut(s)	494
XceI	RCATGY	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.