Rmu_sc0005469.1_g000011

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005469.1
N/A
Physical Location & Seq
Reverse (-)
45258 .. 45554
297 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
atgactcgtcatatggatgatttactccagtacgagtatatgaacgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcagcgttcgtgactctctgcttcctgaactagaagtgagatcgcatagcatctgcgtttgtgattggaagtcagttattgactacaacttggaagaacttcacattaaatcctttatggaattctgtggaaaagatgtcacagatgcgatgttgattgagatgactctctctaccttccctgtctctgctttgatggttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.54

Weight (kDa)

4.53

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
Alw26I GTCTC 2 cut(s) 76, 280
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmsI GCATC 2 cut(s) 150, 226
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 76, 280
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 212
FaiI YATR 7 cut(s) 12, 14, 39, 41, 138, 209, 295
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 11
HinfI GANTC 3 cut(s) 4, 104, 256
Hpy188III TCNNGA 2 cut(s) 101, 116
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4V TGCA 1 cut(s) 293
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 41, 70, 129, 285
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 150, 226
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 101, 229
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 4 cut(s) 59, 62, 92, 197
MluCI AATT 1 cut(s) 212
MlyI GAGTC 2 cut(s) 98, 250
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 101, 229
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 131
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 1 cut(s) 269
SfaNI GCATC 2 cut(s) 150, 226
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 212
SspMI CTAG 1 cut(s) 122
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 212
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 2 cut(s) 101, 229
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 2 cut(s) 101, 229
TspDTI ATGAA 1 cut(s) 56
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.