Rmu_sc0005494.1_g000006

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005494.1
N/A
Physical Location & Seq
Forward (+)
24367 .. 25276
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005494.1_g000006.1.cds

Sequence Viewer

Length: 534 bp
atgcaccatgattgcttgccaccaattgtgcatagggacatatcgagcaaaaacattttgctggattctgaaaatgaggcttgtgtctcagactttggcactgcaaaaattttaaacccagactcggctaattggactgccgttgcaggcacatatggatatgttgcaccagagctcgcgtatacaatggtggtgaatgagaaatgtgatgtttatagcttcggagtggtgacattggaattagttatgggaaggcatccgggagatttttttctcatctctatcatcagggtcctcatcatcatcatcaactgcactacttgcccatcaaatgccaatcggagatgttctggaccaacgtatttcccctcctacacatcaagttgcaggggaaattctttctcttgtgaagatggcattttcatgcctgaatgcaaatccacaatctcgtccaacaatggaacaagtttcttaacaactggaaactcagaggctgcatttgtcaaagtccttagatctgataacatgtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.39

Weight (kDa)

5.25

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 182
AccII CGCG 1 cut(s) 179
AcsI RAATTY 2 cut(s) 108, 394
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 525
AluBI AGCT 2 cut(s) 175, 219
AluI AGCT 2 cut(s) 175, 219
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 108, 394
AspS9I GGNCC 2 cut(s) 292, 353
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 205, 241
AvaII GGWCC 2 cut(s) 292, 353
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 334, 407
BceAI ACGGC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 91
BglII AGATCT 1 cut(s) 515
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 292, 353
BmgT120I GGNCC 2 cut(s) 292, 353
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 484
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 102, 501
BseNI ACTGG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 101, 500
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 484
BssMI GATC 1 cut(s) 515
BssNAI GTATAC 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 17, 148, 177
BstDEI CTNAG 3 cut(s) 88, 487, 512
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 259
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BstZ17I GTATAC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 17, 148, 177
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 2 cut(s) 292, 353
CviAII CATG 3 cut(s) 8, 424, 526
CviJI RGCY 5 cut(s) 80, 128, 175, 219, 494
CviKI_1 RGCY 5 cut(s) 80, 128, 175, 219, 494
DdeI CTNAG 3 cut(s) 88, 487, 512
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DraI TTTAAA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 292, 353
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 3 cut(s) 11, 427, 529
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 7, 423, 525
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
HapII CCGG 1 cut(s) 260
Hin1II CATG 3 cut(s) 11, 427, 529
HinfI GANTC 2 cut(s) 65, 122
HpaII CCGG 1 cut(s) 260
HphI GGTGA 2 cut(s) 205, 241
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 6 cut(s) 70, 91, 224, 342, 490, 520
Hpy188III TCNNGA 1 cut(s) 351
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 9 cut(s) 4, 31, 104, 146, 167, 315, 387, 435, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 3 cut(s) 88, 487, 512
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 3 cut(s) 11, 427, 529
Kzo9I GATC 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 1 cut(s) 422
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 5 cut(s) 24, 108, 130, 239, 394
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 4 cut(s) 70, 305, 379, 484
MseI TTAA 2 cut(s) 113, 473
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 321
NciI CCSGG 1 cut(s) 261
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 515
NlaIII CATG 3 cut(s) 11, 427, 529
NlaIV GGNNCC 1 cut(s) 293
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 2 cut(s) 292, 353
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 113, 473
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 2 cut(s) 292, 353
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 177, 221, 362
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 2 cut(s) 292, 353
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 5 cut(s) 24, 108, 130, 239, 394
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 24, 108, 130, 239, 394
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 113, 473
Tru9I TTAA 2 cut(s) 113, 473
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 412
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 292, 353
XapI RAATTY 2 cut(s) 108, 394
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.