Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005575.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3543 .. 4015

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 473 bp

ctcgcatggccgagcaccctggtatccgtttagtggtcattcgcttcttagtggaacctgagattgttggggagatatccacaattaatattgatcacaattctggcagcaaagtggggtcagtagatgaggagttcctcgctgaattcaagcatacaattgccaaggataactcaatcacatacgaagagaaggtagtcagaaatgaggcacaaaccgttggtgtaattcgtgagataggccgatgcaatctgtttctggtcgggcgaagtcctggtggtgaagtagccttggccctaaataggaggagtgagtgcccggaattggggcctgtgggaagcttgttgatttcaccagatttctctacacaagcatcagtgttggtagtgcaacaatacaacggtcaggtaccgttgaatttggcctcggagatggaggaagtgtcacctgatgacgatacagaattgacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

156

Amino Acids

17.05

Weight (kDa)

4.6

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	1 - 134	2e-23	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	145, 417
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	4 cut(s)	33, 302, 324, 325
AgsI	TTSAA	2 cut(s)	150, 417
AjnI	CCWGG	2 cut(s)	18, 273
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw21I	GWGCWC	1 cut(s)	17
AoxI	GGCC	5 cut(s)	8, 240, 293, 328, 422
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	145, 417
AseI	ATTAAT	1 cut(s)	86
Asp718I	GGTACC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	294, 328
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	292, 344, 437
BaeGI	GKGCMC	1 cut(s)	319
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	426
BciT130I	CCWGG	2 cut(s)	20, 275
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	319
BfaI	CTAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	3 cut(s)	20, 275, 319
BmgT120I	GGNCC	2 cut(s)	294, 328
BmiI	GGNNCC	3 cut(s)	56, 329, 410
BmrFI	CCNGG	3 cut(s)	20, 275, 319
BmsI	GCATC	2 cut(s)	235, 382
BpuMI	CCSGG	1 cut(s)	319
BsaJI	CCNNGG	4 cut(s)	18, 164, 290, 425
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 302, 324, 325
BseBI	CCWGG	2 cut(s)	20, 275
BseDI	CCNNGG	4 cut(s)	18, 164, 290, 425
BseLI	CCNNNNNNNGG	4 cut(s)	33, 302, 324, 325
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	145, 321
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	5 cut(s)	10, 242, 295, 330, 424
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	4 cut(s)	33, 302, 324, 325
BsnI	GGCC	5 cut(s)	10, 242, 295, 330, 424
Bsp1286I	GDGCHC	2 cut(s)	17, 319
Bsp143I	GATC	1 cut(s)	93
BspANI	GGCC	5 cut(s)	10, 242, 295, 330, 424
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	56, 329, 410
BspT107I	GGYRCC	1 cut(s)	408
BssECI	CCNNGG	4 cut(s)	18, 164, 290, 425
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	164, 290
Bst2UI	CCWGG	2 cut(s)	20, 275
Bst4CI	ACNGT	3 cut(s)	219, 403, 413
Bst6I	CTCTTC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	48, 59
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	20, 275
BstSCI	CCNGG	3 cut(s)	18, 273, 317
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	10, 242, 295, 330, 424
BtsIMutI	CAGTG	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	294, 328
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	10, 242, 289, 295, 330, 341, 424
CviKI_1	RGCY	7 cut(s)	10, 242, 289, 295, 330, 341, 424
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	48, 59
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	164, 290
Eco32I	GATATC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	18, 273
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	164, 290
ErhI	CCWWGG	2 cut(s)	164, 290
FaeI	CATG	1 cut(s)	9
FaiI	YATR	3 cut(s)	7, 155, 183
FatI	CATG	1 cut(s)	5
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	5 cut(s)	10, 242, 295, 330, 424
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	339
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	3 cut(s)	292, 344, 437
Hpy188I	TCNGA	2 cut(s)	202, 429
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	3 cut(s)	219, 403, 413
HpyCH4V	TGCA	2 cut(s)	248, 390
HpyF3I	CTNAG	2 cut(s)	48, 59
Hsp92II	CATG	1 cut(s)	9
KpnI	GGTACC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	235, 382
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	199
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	17, 319
MluCI	AATT	8 cut(s)	83, 99, 145, 158, 227, 322, 417, 463
MnlI	CCTC	6 cut(s)	123, 148, 201, 299, 429, 435
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	3 cut(s)	20, 275, 319
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	20, 275
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	3 cut(s)	56, 329, 410
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	18, 273
PspGI	CCWGG	2 cut(s)	18, 273
PspN4I	GGNNCC	3 cut(s)	56, 329, 410
PspPI	GGNCC	2 cut(s)	294, 328
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	294, 328
ScrFI	CCNGG	3 cut(s)	20, 275, 319
SduI	GDGCHC	2 cut(s)	17, 319
SetI	ASST	6 cut(s)	60, 197, 343, 410, 450, 472
SfaNI	GCATC	2 cut(s)	235, 382
Sse9I	AATT	8 cut(s)	83, 99, 145, 158, 227, 322, 417, 463
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	18, 273, 317
StyI	CCWWGG	2 cut(s)	164, 290
TaaI	ACNGT	3 cut(s)	219, 403, 413
TasI	AATT	8 cut(s)	83, 99, 145, 158, 227, 322, 417, 463
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	86
XapI	RAATTY	2 cut(s)	145, 417
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.