Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005584.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17418 .. 17864

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgttcaggtcacacacctaccaccacaagggtccagtccgttttcgctccctcaacttccgtgagcccaatagggcgtcttggatgatctcggtcgcggagcaccgctttctcgcgtcaacttccgtcatcctttccagtacaaaaaagcagaacgagctcttcgtcgccgccgaggggatttacaccgatcatttcatttattgcaataaaaaggtcactcttctcatcggcaacgttttgccgattagatctattacggagggagccgtcgtctgctacgtagagcaccacgtcagcgaccgtggaactctccctggattggagaattgtgggtttggaggtacgaattgtagggcaggtgagttggtttgttatccaagtgacattgatcgagttttaggtggtggcagtgagactttgaacacctctggtgaggttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

148

Amino Acids

16.38

Weight (kDa)

7.04

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccII	CGCG	2 cut(s)	98, 116
AciI	CCGC	3 cut(s)	98, 106, 171
AclI	AACGTT	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	142, 346
AfiI	CCNNNNNNNGG	3 cut(s)	28, 177, 322
AgsI	TTSAA	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	3 cut(s)	105, 162, 291
Alw26I	GTCTC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	374, 446
AvaII	GGWCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	69, 162
Bbv12I	GWGCWC	3 cut(s)	105, 162, 291
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	33, 268
BmrFI	CCNGG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	174, 304, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 177, 322
Bse1I	ACTGG	2 cut(s)	35, 138
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	174, 304, 316
BseGI	GGATG	2 cut(s)	90, 129
BseLI	CCNNNNNNNGG	3 cut(s)	28, 177, 322
BseNI	ACTGG	2 cut(s)	35, 138
Bsh1236I	CGCG	2 cut(s)	98, 116
Bsh1285I	CGRYCG	2 cut(s)	96, 304
BsiEI	CGRYCG	2 cut(s)	96, 304
BsiHKAI	GWGCWC	3 cut(s)	105, 162, 291
BslI	CCNNNNNNNGG	3 cut(s)	28, 177, 322
BsmAI	GTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	4 cut(s)	69, 105, 162, 291
Bsp143I	GATC	4 cut(s)	87, 190, 251, 391
BspACI	CCGC	3 cut(s)	98, 106, 171
BspFNI	CGCG	2 cut(s)	98, 116
BspLI	GGNNCC	2 cut(s)	33, 268
BspMI	ACCTGC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	35, 138
BssECI	CCNNGG	3 cut(s)	174, 304, 316
BssMI	GATC	4 cut(s)	87, 190, 251, 391
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	167, 228
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	90, 129
BstFNI	CGCG	2 cut(s)	98, 116
BstKTI	GATC	4 cut(s)	90, 193, 254, 394
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	4 cut(s)	87, 190, 251, 391
BstMCI	CGRYCG	2 cut(s)	96, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSNI	TACGTA	1 cut(s)	283
BstUI	CGCG	2 cut(s)	98, 116
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	90, 129
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	2 cut(s)	66, 105
Csp6I	GTAC	2 cut(s)	141, 345
CviJI	RGCY	3 cut(s)	67, 160, 269
CviKI_1	RGCY	3 cut(s)	67, 160, 269
CviQI	GTAC	2 cut(s)	141, 345
DpnI	GATC	4 cut(s)	89, 192, 253, 393
DpnII	GATC	4 cut(s)	87, 190, 251, 391
Eam1104I	CTCTTC	2 cut(s)	167, 228
EarI	CTCTTC	2 cut(s)	167, 228
Ecl136II	GAGCTC	1 cut(s)	160
Eco105I	TACGTA	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	69, 162
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	69, 162
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	97, 116
FriOI	GRGCYC	2 cut(s)	69, 162
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HgaI	GACGC	2 cut(s)	66, 105
Hin1I	GRCGYC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HphI	GGTGA	2 cut(s)	374, 446
Hpy166II	GTNNAC	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	170, 275
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	3 cut(s)	237, 282, 294
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpySE526I	ACGT	3 cut(s)	237, 282, 294
Hsp92I	GRCGYC	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	87, 190, 251, 391
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	53, 100, 266
LpnPI	CCDG	6 cut(s)	48, 151, 303, 330, 345, 417
MaeII	ACGT	3 cut(s)	237, 282, 294
MaeIII	GTNAC	3 cut(s)	9, 217, 383
MalI	GATC	4 cut(s)	89, 192, 253, 393
MboI	GATC	4 cut(s)	87, 190, 251, 391
MboII	GAAGA	2 cut(s)	154, 215
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	4 cut(s)	69, 105, 162, 291
MluCI	AATT	2 cut(s)	328, 349
MnlI	CCTC	6 cut(s)	62, 169, 256, 335, 430, 439
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	2 cut(s)	98, 116
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	4 cut(s)	87, 190, 251, 391
NlaIV	GGNNCC	2 cut(s)	33, 268
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	9, 217, 383
PaqCI	CACCTGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 171, 279
PkrI	GCNGC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	33, 268
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	142, 346
RsaNI	GTAC	2 cut(s)	141, 345
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	87, 190, 251, 391
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	4 cut(s)	69, 105, 162, 291
SinI	GGWCC	1 cut(s)	32
SnaBI	TACGTA	1 cut(s)	283
Sse9I	AATT	2 cut(s)	328, 349
SsiI	CCGC	3 cut(s)	98, 106, 171
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	3 cut(s)	240, 285, 297
TaqI	TCGA	1 cut(s)	394
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	328, 349
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	3 cut(s)	9, 217, 383
Tsp45I	GTSAC	3 cut(s)	9, 217, 383
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	4 cut(s)	29, 50, 115, 275
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.