Rmu_sc0005588.1_g000003

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005588.1
N/A
Physical Location & Seq
Reverse (-)
7938 .. 10046
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atgggtaaggctaggagtagcagtgggaagaataagaacactagcattcccaagctcaaggttttagtagaaaagctgcaatggatcctatccttgggtccattgaaatcgaattattcgacatcagaggctgcgaacgttgagcaaggtcactttgtagtaatggctgtacacggggaagaagagaagcgatttgtggtgccgttgagctatttgacacacccaaatttctttaagctgttggagcaggcagctgaggagtatggttttaattacaagggtgcattaacgactcgattccggcttggagcttcagagcttcccggacatctgacaaacaaaactggcgaagcccagaccagattctggggtggagagcttctcggacatctgacgaacaaaaccggcgaagcccagaggggttgggatcgtggagttggatggcgtcatcctctggtggtccgacggtcggacagagcggcggcggtggaggccgacattgacgagcttctcggacatctgacgaacaaaaccggcgaagcccagaggggttgggatcgtggagttggatggcatcatcctctggtggtccgacggtcggacagagcggcggcggcggaggccgacattgacggtggagtggtgggcgtggtggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

219

Amino Acids

24.07

Weight (kDa)

9.33

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 30 - 97 1.1e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 366
AccBSI CCGCTC 2 cut(s) 479, 608
AciI CCGC 7 cut(s) 479, 482, 485, 608, 611, 614, 617
AclI AACGTT 1 cut(s) 138
AclWI GGATC 4 cut(s) 79, 92, 435, 564
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 4 cut(s) 94, 366, 469, 598
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 9 cut(s) 55, 76, 210, 238, 254, 311, 319, 379, 508
AluI AGCT 9 cut(s) 55, 76, 210, 238, 254, 311, 319, 379, 508
AlwI GGATC 4 cut(s) 79, 92, 435, 564
AlwNI CAGNNNCTG 2 cut(s) 131, 366
AoxI GGCC 2 cut(s) 492, 621
ApeKI GCWGC 3 cut(s) 76, 131, 251
ApoI RAATTY 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 98, 460, 589
AsuC2I CCSGG 1 cut(s) 324
AvaII GGWCC 3 cut(s) 98, 460, 589
BamHI GGATCC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 63, 118, 263
BccI CCATC 2 cut(s) 435, 564
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 2 cut(s) 12, 42
BisI GCNGC 8 cut(s) 77, 132, 252, 480, 483, 609, 612, 615
BlsI GCNGC 8 cut(s) 78, 133, 253, 481, 484, 610, 613, 616
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 3 cut(s) 98, 460, 589
BmgT120I GGNCC 3 cut(s) 98, 460, 589
BmiI GGNNCC 3 cut(s) 86, 99, 201
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 583
BplI GAGNNNNNCTC 2 cut(s) 366, 398
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 366, 469, 598
Bse118I RCCGGY 2 cut(s) 404, 533
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 4 cut(s) 446, 448, 575, 577
BseLI CCNNNNNNNGG 4 cut(s) 94, 366, 469, 598
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 3 cut(s) 63, 118, 263
Bsh1285I CGRYCG 2 cut(s) 470, 599
BshFI GGCC 2 cut(s) 494, 623
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 2 cut(s) 470, 599
BsiSI CCGG 4 cut(s) 301, 324, 405, 534
BslI CCNNNNNNNGG 4 cut(s) 94, 366, 469, 598
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 494, 623
Bsp1407I TGTACA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 84, 427, 556
BspACI CCGC 7 cut(s) 479, 482, 485, 608, 611, 614, 617
BspANI GGCC 2 cut(s) 494, 623
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 86, 99, 201
BspPI GGATC 4 cut(s) 79, 92, 435, 564
BspT107I GGYRCC 1 cut(s) 199
BsrBI CCGCTC 2 cut(s) 479, 608
BsrDI GCAATG 1 cut(s) 86
BsrFI RCCGGY 2 cut(s) 404, 533
BsrGI TGTACA 1 cut(s) 169
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 2 cut(s) 404, 533
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 84, 427, 556
BssNI GRCGYC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 468, 597, 635
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 255, 657
BstF5I GGATG 4 cut(s) 446, 448, 575, 577
BstKTI GATC 3 cut(s) 87, 430, 559
BstMBI GATC 3 cut(s) 84, 427, 556
BstMCI CGRYCG 2 cut(s) 470, 599
BstMWI GCNNNNNNNGC 4 cut(s) 244, 491, 614, 620
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 63, 118, 263
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 2 cut(s) 494, 623
BtsCI GGATG 4 cut(s) 446, 448, 575, 577
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 2 cut(s) 131, 366
Cfr10I RCCGGY 2 cut(s) 404, 533
Cfr13I GGNCC 3 cut(s) 98, 460, 589
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 170
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 2 cut(s) 255, 657
DpnI GATC 3 cut(s) 86, 429, 558
DpnII GATC 3 cut(s) 84, 427, 556
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 632
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 3 cut(s) 98, 460, 589
Eco57I CTGAAG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 1 cut(s) 264
Fnu4HI GCNGC 8 cut(s) 77, 132, 252, 480, 483, 609, 612, 615
FokI GGATG 4 cut(s) 435, 453, 564, 582
Fsp4HI GCNGC 8 cut(s) 77, 132, 252, 480, 483, 609, 612, 615
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 8 cut(s) 77, 132, 252, 480, 483, 609, 612, 615
HaeIII GGCC 2 cut(s) 494, 623
HapII CCGG 4 cut(s) 301, 324, 405, 534
HgaI GACGC 1 cut(s) 434
Hin1I GRCGYC 1 cut(s) 445
HinfI GANTC 3 cut(s) 292, 297, 363
HpaII CCGG 4 cut(s) 301, 324, 405, 534
Hpy166II GTNNAC 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 468, 597
HpyCH4III ACNGT 3 cut(s) 468, 597, 635
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 79, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 491, 614, 620
HpyF3I CTNAG 2 cut(s) 255, 657
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 84, 427, 556
LmnI GCTCC 2 cut(s) 244, 308
Lsp1109I GCAGC 3 cut(s) 63, 118, 263
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 86, 429, 558
MbiI CCGCTC 2 cut(s) 479, 608
MboI GATC 3 cut(s) 84, 427, 556
MboII GAAGA 3 cut(s) 40, 191, 194
MflI RGATCY 1 cut(s) 84
MluCI AATT 3 cut(s) 112, 226, 271
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 7 cut(s) 222, 418, 450, 487, 547, 579, 616
MnlI CCTC 8 cut(s) 121, 250, 411, 462, 484, 540, 591, 613
MseI TTAA 3 cut(s) 234, 270, 287
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 4 cut(s) 301, 324, 405, 534
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 244, 491, 614, 620
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 84, 427, 556
NlaIV GGNNCC 3 cut(s) 86, 99, 201
NmuCI GTSAC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 297, 363
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 8 cut(s) 78, 133, 253, 481, 484, 610, 613, 616
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp1406I AACGTT 1 cut(s) 138
PspN4I GGNNCC 3 cut(s) 86, 99, 201
PspPI GGNCC 3 cut(s) 98, 460, 589
PstNI CAGNNNCTG 2 cut(s) 131, 366
PsuI RGATCY 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 234, 270, 287
SatI GCNGC 8 cut(s) 77, 132, 252, 480, 483, 609, 612, 615
Sau3AI GATC 3 cut(s) 84, 427, 556
Sau96I GGNCC 3 cut(s) 98, 460, 589
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 324
SfaNI GCATC 1 cut(s) 583
SinI GGWCC 3 cut(s) 98, 460, 589
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 3 cut(s) 112, 226, 271
SsiI CCGC 7 cut(s) 479, 482, 485, 608, 611, 614, 617
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 468, 597, 635
TaiI ACGT 1 cut(s) 141
TaqI TCGA 3 cut(s) 110, 119, 295
TasI AATT 3 cut(s) 112, 226, 271
TatI WGTACW 1 cut(s) 169
TauI GCSGC 5 cut(s) 482, 485, 611, 614, 617
TfiI GAWTC 2 cut(s) 297, 363
Tru1I TTAA 3 cut(s) 234, 270, 287
Tru9I TTAA 3 cut(s) 234, 270, 287
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 3 cut(s) 76, 131, 251
Tsp45I GTSAC 1 cut(s) 149
TspRI CASTG 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 3 cut(s) 98, 460, 589
XapI RAATTY 1 cut(s) 226
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.