Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005597.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70268 .. 72580

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggaaacatggatacttgtgaattctgacatggttcagagggcaacccttattggtgcgtctctcagacgtgttaatgagatgctgaaaggttcagatcacctgctgctccattgtcctgttgctgcatccttgtggagaagattgtttagggagaccaaaagtgatagctggatttggaagggagaaaaggatgaggaggtggatcctttgtcgaatataaagtctgtttttgggcctccctttgggcatcggccaagaagattcccttctgggatatggtttgaaatcaaatctgtttggagtcagggccttgattcttgtcaggatatggattcaccggtagctaatatgcagagtaaaatagacagaaccgaagaaaaaccttctgttgtggtttcgtttcttcatagcaacttcttgactgtaggacaaataattttgcctcactacactaaggttctttctgggaaacctcgaaccttggtcgctacggcggcatatggagttctcactggtagaaggattccatcaacaattggaactgatctcccaacatttccgtggatgataattccctgcaaagagttttggcgcctctgctacgattcaattctcgaatgctacagaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi1

Protein Analysis

211

Amino Acids

24.13

Weight (kDa)

8.84

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	594
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	2 cut(s)	200, 213
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	70
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	287, 612
AjiI	CACGTC	1 cut(s)	71
AluBI	AGCT	2 cut(s)	171, 347
AluI	AGCT	2 cut(s)	171, 347
Alw26I	GTCTC	2 cut(s)	66, 149
AlwI	GGATC	2 cut(s)	200, 213
AoxI	GGCC	3 cut(s)	236, 254, 310
ApeKI	GCWGC	2 cut(s)	106, 125
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AsiGI	ACCGGT	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	236, 310
AsuHPI	GGTGA	2 cut(s)	92, 330
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	93, 112
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	66, 149
BfmI	CTRYAG	2 cut(s)	426, 625
BfoI	RGCGCY	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	6
BisI	GCNGC	3 cut(s)	107, 126, 498
BlsI	GCNGC	3 cut(s)	108, 127, 499
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	236, 310
BmiI	GGNNCC	2 cut(s)	207, 596
BmsI	GCATC	3 cut(s)	72, 137, 259
BsaHI	GRCGYC	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	483, 563
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	483, 563
BseGI	GGATG	3 cut(s)	128, 199, 573
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	93, 112
BshFI	GGCC	3 cut(s)	238, 256, 312
BshNI	GGYRCC	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	66, 149
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	3 cut(s)	238, 256, 312
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	97, 205, 547
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	3 cut(s)	238, 256, 312
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	207, 596
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	2 cut(s)	200, 213
BspT107I	GGYRCC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	483, 563
BssMI	GATC	3 cut(s)	97, 205, 547
BssNI	GRCGYC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	595
BstDEI	CTNAG	2 cut(s)	65, 456
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	128, 199, 573
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	3 cut(s)	100, 208, 550
BstMAI	GTCTC	2 cut(s)	66, 149
BstMBI	GATC	3 cut(s)	97, 205, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSFI	CTRYAG	2 cut(s)	426, 625
BstV1I	GCAGC	2 cut(s)	93, 112
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	238, 256, 312
BtgI	CCRYGG	1 cut(s)	563
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	128, 199, 573
BtsIMutI	CAGTG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	236, 310
CseI	GACGC	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	2 cut(s)	9, 31
CviJI	RGCY	5 cut(s)	171, 238, 256, 312, 347
CviKI_1	RGCY	5 cut(s)	171, 238, 256, 312, 347
DdeI	CTNAG	2 cut(s)	65, 456
DinI	GGCGCC	1 cut(s)	596
DpnI	GATC	3 cut(s)	99, 207, 549
DpnII	GATC	3 cut(s)	97, 205, 547
EaeI	YGGCCR	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	483
EgeI	GGCGCC	1 cut(s)	596
EheI	GGCGCC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	12, 34
FaiI	YATR	9 cut(s)	10, 32, 221, 280, 332, 353, 411, 502, 504
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FatI	CATG	2 cut(s)	8, 30
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	107, 126, 498
FokI	GGATG	3 cut(s)	115, 206, 580
Fsp4HI	GCNGC	3 cut(s)	107, 126, 498
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	3 cut(s)	107, 126, 498
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	3 cut(s)	238, 256, 312
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	1 cut(s)	595
Hin1II	CATG	2 cut(s)	12, 34
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	6 cut(s)	264, 304, 317, 335, 526, 608
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	92, 330
Hpy188I	TCNGA	4 cut(s)	28, 39, 68, 97
Hpy188III	TCNNGA	3 cut(s)	326, 421, 617
HpyAV	CCTTC	4 cut(s)	175, 279, 396, 516
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	70, 632
HpyCH4V	TGCA	3 cut(s)	128, 355, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	65, 456
HpySE526I	ACGT	2 cut(s)	70, 632
Hsp92I	GRCGYC	1 cut(s)	595
Hsp92II	CATG	2 cut(s)	12, 34
HspAI	GCGC	1 cut(s)	595
KasI	GGCGCC	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	97, 205, 547
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	2 cut(s)	93, 112
LweI	GCATC	3 cut(s)	72, 137, 259
MaeII	ACGT	2 cut(s)	70, 632
MalI	GATC	3 cut(s)	99, 207, 549
MboI	GATC	3 cut(s)	97, 205, 547
MboII	GAAGA	4 cut(s)	153, 273, 389, 398
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	5 cut(s)	22, 438, 537, 573, 612
Mly113I	GGCGCC	1 cut(s)	595
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	33, 190, 193, 249, 456, 486, 608
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	133, 562
MspI	CCGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	497
NarI	GGCGCC	1 cut(s)	595
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	3 cut(s)	97, 205, 547
NlaIII	CATG	2 cut(s)	12, 34
NlaIV	GGNNCC	2 cut(s)	207, 596
PaqCI	CACCTGC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	5 cut(s)	264, 317, 335, 526, 608
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	108, 127, 499
PleI	GAGTC	1 cut(s)	312
PluTI	GGCGCC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	207, 596
PspPI	GGNCC	2 cut(s)	236, 310
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	2 cut(s)	133, 562
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	107, 126, 498
Sau3AI	GATC	3 cut(s)	97, 205, 547
Sau96I	GGNCC	2 cut(s)	236, 310
SchI	GAGTC	1 cut(s)	313
SfaNI	GCATC	3 cut(s)	72, 137, 259
SfcI	CTRYAG	2 cut(s)	426, 625
SfoI	GGCGCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	2 cut(s)	133, 562
Sse9I	AATT	5 cut(s)	22, 438, 537, 573, 612
SsiI	CCGC	1 cut(s)	497
SspDI	GGCGCC	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	73, 635
TaqI	TCGA	3 cut(s)	215, 478, 618
TasI	AATT	5 cut(s)	22, 438, 537, 573, 612
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	5 cut(s)	264, 317, 335, 526, 608
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	2 cut(s)	106, 125
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.