Rmu_sc0005607.1_g000001

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005607.1
N/A
Physical Location & Seq
Reverse (-)
5990 .. 7099
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
atgacgaaaacgcccctcctccaatacccgccacacaattcccggactcacaaagcaaactggtggtcaccaatcaacggtcgagttctacacccactccgaccctctcactctcgccctccgaccccaaaaaccccgatgatcatctccaaagcttcaaactttactgcccacggagctctctcccctcgctacacccccaaatgggccctcaaaagcccacaccctcacgtctgcatggtctactcgtcctccgccgacggacccagatggaaccagtgcgaccatttcaacggcaacaagaacggcgccgtttacaagaaacccagaaacgcagaagaggcagatgaagaaggaggagagagaagggtgagctgtgaagtggatatgatttcgtggcgggagcgccgagtcaaggccgagatttcggtcaatgccgacgtcaattccgtctggaacgctctcacggattacgagcgtcttgctgacttcatccccaatcttgtttccagtgggaggattccatgtccacagcctgggcgtatttggctggagcagagaggcttgcagagagcactgtattggcacattgaagctcgagttgttttggaccttcaggagttttccaatttgagtggtaatgatcgtgagcttcacttttccatggttgatggggacttcaaaaagtttgaaggcaaatggtctgtgaaatgcgggacaaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

241

Amino Acids

27.58

Weight (kDa)

9.44

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 144 - 237 6e-12 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 536
AccI GTMKAC 1 cut(s) 243
AciI CCGC 4 cut(s) 29, 255, 400, 714
AcuI CTGAAG 1 cut(s) 599
AcyI GRCGYC 2 cut(s) 309, 441
AfiI CCNNNNNNNGG 6 cut(s) 77, 204, 205, 415, 516, 536
AgsI TTSAA 5 cut(s) 159, 292, 593, 682, 692
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 5 cut(s) 155, 179, 375, 596, 652
AluI AGCT 5 cut(s) 155, 179, 375, 596, 652
Alw21I GWGCWC 2 cut(s) 181, 577
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 2 cut(s) 207, 417
ApaI GGGCCC 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 311, 408
AspS9I GGNCC 4 cut(s) 207, 208, 263, 610
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 60, 382
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 2 cut(s) 263, 610
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 181, 211
Bbv12I GWGCWC 2 cut(s) 181, 577
BccI CCATC 2 cut(s) 264, 665
BceAI ACGGC 3 cut(s) 296, 310, 322
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 537
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 43
BfoI RGCGCY 2 cut(s) 312, 409
Bme1390I CCNGG 2 cut(s) 43, 537
Bme18I GGWCC 2 cut(s) 263, 610
BmeT110I CYCGRG 1 cut(s) 597
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 4 cut(s) 207, 208, 263, 610
BmiI GGNNCC 4 cut(s) 209, 265, 275, 310
BmrFI CCNGG 2 cut(s) 43, 537
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 309, 441
BsaJI CCNNGG 3 cut(s) 172, 536, 663
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 236, 266
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 204, 205, 415, 516, 536
Bse1I ACTGG 3 cut(s) 65, 277, 510
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 172, 536, 663
BseGI GGATG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 6 cut(s) 77, 204, 205, 415, 516, 536
BseNI ACTGG 3 cut(s) 65, 277, 510
BseRI GAGGAG 2 cut(s) 8, 372
BseSI GKGCMC 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 209, 419
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 181, 577
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 6 cut(s) 77, 204, 205, 415, 516, 536
BsmFI GGGAC 1 cut(s) 689
BsnI GGCC 2 cut(s) 209, 419
BsoBI CYCGRG 1 cut(s) 597
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 3 cut(s) 181, 211, 577
Bsp143I GATC 2 cut(s) 141, 643
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 4 cut(s) 29, 255, 400, 714
BspANI GGCC 2 cut(s) 209, 419
BspLI GGNNCC 4 cut(s) 209, 265, 275, 310
BspT107I GGYRCC 1 cut(s) 308
BsrI ACTGG 3 cut(s) 65, 277, 510
BssECI CCNNGG 3 cut(s) 172, 536, 663
BssMI GATC 2 cut(s) 141, 643
BssNI GRCGYC 2 cut(s) 309, 441
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 80, 579
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 309, 441
BstC8I GCNNGC 1 cut(s) 566
BstDSI CCRYGG 2 cut(s) 172, 663
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 492
BstH2I RGCGCY 2 cut(s) 312, 409
BstHHI GCGC 2 cut(s) 311, 408
BstKTI GATC 2 cut(s) 144, 646
BstMBI GATC 2 cut(s) 141, 643
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 176, 341, 547
BstNI CCWGG 1 cut(s) 537
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 41, 535
BstSLI GKGCMC 1 cut(s) 211
BsuRI GGCC 2 cut(s) 209, 419
BtgI CCRYGG 2 cut(s) 172, 663
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 492
BtsIMutI CAGTG 3 cut(s) 284, 517, 575
Cac8I GCNNGC 1 cut(s) 566
CfoI GCGC 2 cut(s) 311, 408
Cfr13I GGNCC 4 cut(s) 207, 208, 263, 610
CseI GACGC 1 cut(s) 467
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 3 cut(s) 238, 525, 664
DinI GGCGCC 1 cut(s) 310
DpnI GATC 2 cut(s) 143, 645
DpnII GATC 2 cut(s) 141, 643
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 181, 211
Eco47I GGWCC 2 cut(s) 263, 610
Eco53kI GAGCTC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 2 cut(s) 181, 211
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 3 cut(s) 241, 528, 667
FaiI YATR 4 cut(s) 239, 389, 526, 665
FaqI GGGAC 1 cut(s) 689
FatI CATG 3 cut(s) 237, 524, 663
FauI CCCGC 3 cut(s) 36, 393, 707
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 243
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 2 cut(s) 181, 211
GlaI GCGC 2 cut(s) 310, 407
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 2 cut(s) 312, 409
HaeIII GGCC 2 cut(s) 209, 419
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 311, 408
Hin1I GRCGYC 2 cut(s) 309, 441
Hin1II CATG 3 cut(s) 241, 528, 667
Hin6I GCGC 2 cut(s) 309, 406
HinP1I GCGC 2 cut(s) 309, 406
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 3 cut(s) 46, 411, 520
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 60, 382
Hpy166II GTNNAC 3 cut(s) 244, 316, 530
Hpy188I TCNGA 2 cut(s) 101, 123
Hpy188III TCNNGA 3 cut(s) 454, 617, 647
Hpy8I GTNNAC 3 cut(s) 244, 316, 530
Hpy99I CGWCG 2 cut(s) 263, 443
HpyAV CCTTC 4 cut(s) 347, 360, 623, 686
HpyCH4III ACNGT 2 cut(s) 80, 579
HpyCH4IV ACGT 2 cut(s) 231, 441
HpyCH4V TGCA 2 cut(s) 237, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 341, 547
HpySE526I ACGT 2 cut(s) 231, 441
Hsp92I GRCGYC 2 cut(s) 309, 441
Hsp92II CATG 3 cut(s) 241, 528, 667
HspAI GCGC 2 cut(s) 309, 406
KasI GGCGCC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 643
LmnI GCTCC 3 cut(s) 176, 403, 553
MaeII ACGT 2 cut(s) 231, 441
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 143, 645
MboI GATC 2 cut(s) 141, 643
MboII GAAGA 2 cut(s) 350, 362
MhlI GDGCHC 3 cut(s) 181, 211, 577
MluCI AATT 3 cut(s) 37, 445, 628
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 40, 420
MmeI TCCRAC 2 cut(s) 124, 146
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 43, 537
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 176, 341, 547
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 663
NdeII GATC 2 cut(s) 141, 643
NlaIII CATG 3 cut(s) 241, 528, 667
NlaIV GGNNCC 4 cut(s) 209, 265, 275, 310
NmeAIII GCCGAG 2 cut(s) 434, 445
NmuCI GTSAC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 41
PleI GAGTC 2 cut(s) 40, 419
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 40, 419
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 535
PspEI GGTNACC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 4 cut(s) 209, 265, 275, 310
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 4 cut(s) 207, 208, 263, 610
PspXI VCTCGAGB 1 cut(s) 597
SacI GAGCTC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 141, 643
Sau96I GGNCC 4 cut(s) 207, 208, 263, 610
SchI GAGTC 2 cut(s) 40, 420
ScrFI CCNGG 2 cut(s) 43, 537
SduI GDGCHC 3 cut(s) 181, 211, 577
SetI ASST 9 cut(s) 157, 181, 234, 377, 444, 598, 615, 654, 725
SfoI GGCGCC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 263, 610
SlaI CTCGAG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 3 cut(s) 37, 445, 628
SsiI CCGC 4 cut(s) 29, 255, 400, 714
SspDI GGCGCC 1 cut(s) 308
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 41, 535
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 80, 579
TaiI ACGT 2 cut(s) 234, 444
TaqI TCGA 2 cut(s) 82, 598
TaqII GACCGA 1 cut(s) 418
TasI AATT 3 cut(s) 37, 445, 628
TfiI GAWTC 1 cut(s) 520
TscAI CASTG 3 cut(s) 284, 517, 582
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 363, 481
TspGWI ACGGA 4 cut(s) 189, 276, 439, 482
TspRI CASTG 3 cut(s) 284, 517, 582
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 263, 610
XhoI CTCGAG 1 cut(s) 597
XmiI GTMKAC 1 cut(s) 243
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.