Rmu_sc0005607.1_g000019

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005607.1
N/A
Physical Location & Seq
Reverse (-)
87521 .. 88485
965 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ctgcccggtatttatctactgctccatcggtgcccccgacaccggtacagtaacgctatcccggcggtgaagactgcccatggcacccagcttccagttcgccctcagaggtcgctcttctgccttgatcccgtcgatcttaagttttgcttaacgtcgactgcttcaccatggtttgaaggctgcatttgtcagccttgctcggcggagtccaggggtctagcatttatgtggcgtcatggtatggtggtgagacaacgcgatcatcttcataatcatattgatgttgagattggtgtgccaggatcaagggaggaattctgttttactgataagtctggtggccctaggaaggcagctgctcctacggtacgtttcaggcaagctctaatagactgtgcgttggttgatatgaaattctcaggaccacggttcacttgggccaactgcttcaccaaggaacgtttggatcgtgcttgtcacacttcttcatggagagatagatttctgaattcaagggttgttactctgcctttgaggaagtctgaccataatcccttcctcattgtgataaggtcctctagggctttctatcgtcgagcacctaaatgttttcgttttgaggaaatgtggtcacaacacaaggactgtgtatctgttattgagaagggtggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

225

Amino Acids

25.88

Weight (kDa)

9.66

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 30, 83
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 65, 206
AclI AACGTT 1 cut(s) 463
AclWI GGATC 3 cut(s) 122, 313, 477
AcsI RAATTY 3 cut(s) 317, 416, 511
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 2 cut(s) 47, 372
AfiI CCNNNNNNNGG 2 cut(s) 42, 352
AflII CTTAAG 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 179, 516
AjnI CCWGG 2 cut(s) 212, 301
AluBI AGCT 3 cut(s) 91, 359, 386
AluI AGCT 3 cut(s) 91, 359, 386
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 3 cut(s) 122, 313, 477
AoxI GGCC 2 cut(s) 343, 441
ApeKI GCWGC 3 cut(s) 183, 356, 359
ApoI RAATTY 3 cut(s) 317, 416, 511
AsiGI ACCGGT 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 347
AspS9I GGNCC 4 cut(s) 344, 425, 441, 576
AsuC2I CCSGG 2 cut(s) 6, 62
AsuHPI GGTGA 4 cut(s) 79, 159, 262, 445
AvaII GGWCC 2 cut(s) 425, 576
AvrII CCTAGG 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 2 cut(s) 30, 83
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 3 cut(s) 170, 346, 368
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 214, 303
BcnI CCSGG 2 cut(s) 6, 62
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 3 cut(s) 221, 348, 582
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 184, 357, 360
BlnI CCTAGG 1 cut(s) 347
BlsI GCNGC 3 cut(s) 185, 358, 361
Bme1390I CCNGG 4 cut(s) 6, 62, 214, 303
Bme18I GGWCC 2 cut(s) 425, 576
BmgT120I GGNCC 4 cut(s) 344, 425, 441, 576
BmiI GGNNCC 2 cut(s) 32, 85
BmrFI CCNGG 4 cut(s) 6, 62, 214, 303
BpiI GAAGAC 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 6, 62
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 6 cut(s) 79, 170, 213, 347, 428, 456
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 352
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 214, 303
BseDI CCNNGG 6 cut(s) 79, 170, 213, 347, 428, 456
BseLI CCNNNNNNNGG 2 cut(s) 42, 352
BseMII CTCAG 2 cut(s) 119, 435
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 3 cut(s) 170, 346, 368
BseYI CCCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 345, 443
BshNI GGYRCC 2 cut(s) 30, 83
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 3 cut(s) 6, 43, 62
BslI CCNNNNNNNGG 2 cut(s) 42, 352
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 345, 443
Bsp1286I GDGCHC 2 cut(s) 35, 604
Bsp143I GATC 5 cut(s) 127, 136, 262, 305, 469
Bsp19I CCATGG 2 cut(s) 79, 170
BspACI CCGC 2 cut(s) 65, 206
BspANI GGCC 2 cut(s) 345, 443
BspCNI CTCAG 2 cut(s) 118, 434
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 32, 85
BspPI GGATC 3 cut(s) 122, 313, 477
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 30, 83
BspTI CTTAAG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 6 cut(s) 79, 170, 213, 347, 428, 456
BssMI GATC 5 cut(s) 127, 136, 262, 305, 469
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 4 cut(s) 79, 170, 347, 456
Bst2UI CCWGG 2 cut(s) 214, 303
Bst4CI ACNGT 5 cut(s) 50, 370, 398, 432, 650
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 235
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 105, 421
BstDSI CCRYGG 3 cut(s) 79, 170, 428
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 5 cut(s) 130, 139, 265, 308, 472
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 5 cut(s) 127, 136, 262, 305, 469
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 214, 303
BstSCI CCNGG 4 cut(s) 4, 60, 212, 301
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 170, 346, 368
BstV2I GAAGAC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 345, 443
BtgI CCRYGG 3 cut(s) 79, 170, 428
Cac8I GCNNGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 344, 425, 441, 576
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 46, 371
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 4 cut(s) 80, 171, 239, 492
CviJI RGCY 8 cut(s) 91, 183, 196, 345, 359, 386, 443, 587
CviKI_1 RGCY 8 cut(s) 91, 183, 196, 345, 359, 386, 443, 587
CviQI GTAC 2 cut(s) 46, 371
DdeI CTNAG 2 cut(s) 105, 421
DpnI GATC 5 cut(s) 129, 138, 264, 307, 471
DpnII GATC 5 cut(s) 127, 136, 262, 305, 469
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 4 cut(s) 79, 170, 347, 456
Eco47I GGWCC 2 cut(s) 425, 576
EcoO109I RGGNCCY 1 cut(s) 576
EcoRI GAATTC 2 cut(s) 317, 511
EcoRII CCWGG 2 cut(s) 212, 301
EcoT14I CCWWGG 4 cut(s) 79, 170, 347, 456
ErhI CCWWGG 4 cut(s) 79, 170, 347, 456
FaeI CATG 4 cut(s) 83, 174, 242, 495
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 4 cut(s) 79, 170, 238, 491
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 184, 357, 360
Fsp4HI GCNGC 3 cut(s) 184, 357, 360
FspBI CTAG 3 cut(s) 221, 348, 582
GluI GCNGC 3 cut(s) 184, 357, 360
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 345, 443
HapII CCGG 3 cut(s) 6, 43, 62
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 4 cut(s) 83, 174, 242, 495
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 209
HpaII CCGG 3 cut(s) 6, 43, 62
HphI GGTGA 4 cut(s) 79, 159, 262, 445
Hpy166II GTNNAC 2 cut(s) 159, 435
Hpy188I TCNGA 3 cut(s) 108, 510, 547
Hpy188III TCNNGA 1 cut(s) 423
Hpy8I GTNNAC 2 cut(s) 159, 435
Hpy99I CGWCG 3 cut(s) 137, 160, 600
HpyAV CCTTC 4 cut(s) 173, 346, 568, 661
HpyCH4III ACNGT 5 cut(s) 50, 370, 398, 432, 650
HpyCH4IV ACGT 3 cut(s) 155, 373, 463
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 105, 421
HpySE526I ACGT 3 cut(s) 155, 373, 463
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 4 cut(s) 83, 174, 242, 495
Kzo9I GATC 5 cut(s) 127, 136, 262, 305, 469
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 27, 367
Lsp1109I GCAGC 3 cut(s) 170, 346, 368
MaeI CTAG 3 cut(s) 221, 348, 582
MaeII ACGT 3 cut(s) 155, 373, 463
MaeIII GTNAC 4 cut(s) 50, 479, 523, 633
MalI GATC 5 cut(s) 129, 138, 264, 307, 471
MboI GATC 5 cut(s) 127, 136, 262, 305, 469
MboII GAAGA 4 cut(s) 82, 109, 260, 480
MhlI GDGCHC 2 cut(s) 35, 604
MluCI AATT 3 cut(s) 317, 416, 511
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 7 cut(s) 102, 114, 307, 531, 572, 589, 616
MseI TTAA 2 cut(s) 141, 152
MslI CAYNNNNRTG 3 cut(s) 229, 282, 607
MspA1I CMGCKG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 3 cut(s) 6, 43, 62
MspR9I CCNGG 4 cut(s) 6, 62, 214, 303
MvaI CCWGG 2 cut(s) 214, 303
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 2 cut(s) 6, 62
NcoI CCATGG 2 cut(s) 79, 170
NdeII GATC 5 cut(s) 127, 136, 262, 305, 469
NlaIII CATG 4 cut(s) 83, 174, 242, 495
NlaIV GGNNCC 2 cut(s) 32, 85
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 479, 633
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 2 cut(s) 34, 469
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 3 cut(s) 185, 358, 361
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 212, 301
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 2 cut(s) 212, 301
PspN4I GGNNCC 2 cut(s) 32, 85
PspPI GGNCC 4 cut(s) 344, 425, 441, 576
PspPPI RGGWCCY 1 cut(s) 576
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 2 cut(s) 47, 372
RsaNI GTAC 2 cut(s) 46, 371
RseI CAYNNNNRTG 3 cut(s) 229, 282, 607
SalI GTCGAC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 141, 152
SatI GCNGC 3 cut(s) 184, 357, 360
Sau3AI GATC 5 cut(s) 127, 136, 262, 305, 469
Sau96I GGNCC 4 cut(s) 344, 425, 441, 576
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 6, 62, 214, 303
SduI GDGCHC 2 cut(s) 35, 604
SetI ASST 9 cut(s) 93, 113, 158, 361, 376, 388, 466, 578, 607
SinI GGWCC 2 cut(s) 425, 576
SmiMI CAYNNNNRTG 3 cut(s) 229, 282, 607
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 317, 416, 511
SsiI CCGC 2 cut(s) 65, 206
SspMI CTAG 3 cut(s) 221, 348, 582
StyD4I CCNGG 4 cut(s) 4, 60, 212, 301
StyI CCWWGG 4 cut(s) 79, 170, 347, 456
TaaI ACNGT 5 cut(s) 50, 370, 398, 432, 650
TaiI ACGT 3 cut(s) 158, 376, 466
TaqI TCGA 3 cut(s) 135, 158, 598
TasI AATT 3 cut(s) 317, 416, 511
Tru1I TTAA 2 cut(s) 141, 152
Tru9I TTAA 2 cut(s) 141, 152
TseFI GTSAC 2 cut(s) 479, 633
TseI GCWGC 3 cut(s) 183, 356, 359
Tsp45I GTSAC 2 cut(s) 479, 633
TspDTI ATGAA 3 cut(s) 260, 428, 480
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 425, 576
XapI RAATTY 3 cut(s) 317, 416, 511
XcmI CCANNNNNNNNNTGG 2 cut(s) 435, 463
XmaJI CCTAGG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 3 cut(s) 221, 348, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.