Rmu_sc0005615.1_g000004
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005615.1
OG0019058
Physical Location & Seq
Forward (+)
9188 .. 9800
613 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atgggtattacccatgatacccattacctaatttatatttcgtgggtatttccatacccacccattggagtcatcgacttcgtcggctccggcatcatccccatagtcagaggcatcgccggcctctgggaagcttatatcgaaggtccgagaatcgtcgttttggacacttttcttttctggttcgggtggtacgggttcaacccggaggtgaagcaccggacgtttacagcggaggaggacgagagaatcgctgcggcgcattccaggtactcgtccatggcagaagatggcttcgtcggcggcggaggctgttcgatcgaggagcatcatcaccaccacctcaagcctgagaagaaatcggcgacggtttcggtgtttggcagcagatacagtccgacgagcccatccaaatccgacgtcatcgactccggcgtggtgcctgcagtctcatcggcgcaggtgttcaggccagtggcaagagcagtgttgaggacggagtcgccgccgatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

171

Amino Acids

18.87

Weight (kDa)

6.11

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 8 - 74 2.1e-06 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019058)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009589 RLG00000018158
rosa_multiflora Rmu_sc0005615.1_g000004
rosa_samantha Rh1AG161200 Rh2AG461000 Rh2BG474600 Rh2DG483300 Rh5DG176400 Rh7CG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 5 cut(s) 233, 257, 303, 306, 506
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 2 cut(s) 194, 272
AfiI CCNNNNNNNGG 2 cut(s) 65, 126
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 454
AoxI GGCC 2 cut(s) 121, 470
ApeKI GCWGC 2 cut(s) 254, 384
ArsI GACNNNNNNTTYG 2 cut(s) 405, 437
AspLEI GCGC 2 cut(s) 262, 460
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 223, 326
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 241, 396
BccI CCATC 2 cut(s) 284, 415
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 5 cut(s) 255, 258, 304, 385, 506
BlsI GCNGC 5 cut(s) 256, 259, 305, 386, 507
Bme1390I CCNGG 2 cut(s) 206, 268
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 88, 441
BmrFI CCNGG 2 cut(s) 206, 268
BmsI GCATC 3 cut(s) 102, 123, 337
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 126
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 96, 407
BseLI CCNNNNNNNGG 2 cut(s) 65, 126
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 251, 338
BseXI GCAGC 2 cut(s) 241, 396
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 123, 472
BshNI GGYRCC 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 5 cut(s) 90, 120, 206, 220, 432
BslI CCNNNNNNNGG 2 cut(s) 65, 126
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 2 cut(s) 123, 472
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 5 cut(s) 233, 257, 303, 306, 506
BspANI GGCC 2 cut(s) 123, 472
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 88, 441
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 370, 395
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 121, 444
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 96, 407
BstHHI GCGC 2 cut(s) 262, 460
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 120, 300, 309
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 204, 266
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 241, 396
BsuRI GGCC 2 cut(s) 123, 472
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 96, 407
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 480, 492
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 121, 444
CfoI GCGC 2 cut(s) 262, 460
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 193, 271
CviAII CATG 2 cut(s) 14, 280
CviJI RGCY 8 cut(s) 87, 123, 134, 294, 312, 349, 405, 472
CviKI_1 RGCY 8 cut(s) 87, 123, 134, 294, 312, 349, 405, 472
CviQI GTAC 2 cut(s) 193, 271
DdeI CTNAG 1 cut(s) 351
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 17, 283
FaiI YATR 7 cut(s) 15, 36, 55, 104, 138, 281, 514
FatI CATG 2 cut(s) 13, 279
Fnu4HI GCNGC 5 cut(s) 255, 258, 304, 385, 506
FokI GGATG 2 cut(s) 83, 394
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 5 cut(s) 255, 258, 304, 385, 506
GlaI GCGC 2 cut(s) 261, 459
GluI GCNGC 5 cut(s) 255, 258, 304, 385, 506
HaeIII GGCC 2 cut(s) 123, 472
HapII CCGG 5 cut(s) 90, 120, 206, 220, 432
HhaI GCGC 2 cut(s) 262, 460
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 2 cut(s) 17, 283
Hin6I GCGC 2 cut(s) 260, 458
HinP1I GCGC 2 cut(s) 260, 458
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 69, 153, 249, 428, 500
HpaII CCGG 5 cut(s) 90, 120, 206, 220, 432
HphI GGTGA 2 cut(s) 223, 326
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 110, 150, 399, 418
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 6 cut(s) 86, 161, 302, 370, 403, 422
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 370, 395
HpyCH4IV ACGT 2 cut(s) 224, 420
HpyCH4V TGCA 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 300, 309
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 2 cut(s) 224, 420
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 2 cut(s) 17, 283
HspAI GCGC 2 cut(s) 260, 458
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 92, 325
Lsp1109I GCAGC 2 cut(s) 241, 396
LweI GCATC 3 cut(s) 102, 123, 337
MaeII ACGT 2 cut(s) 224, 420
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 2 cut(s) 299, 367
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 30
MlyI GAGTC 3 cut(s) 78, 422, 509
MmeI TCCRAC 2 cut(s) 422, 441
MnlI CCTC 9 cut(s) 104, 134, 202, 229, 232, 302, 316, 353, 486
MroNI GCCGGC 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 5 cut(s) 90, 120, 206, 220, 432
MspR9I CCNGG 2 cut(s) 206, 268
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 120, 300, 309
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 318
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 17, 283
NlaIV GGNNCC 2 cut(s) 88, 441
PaqCI CACCTGC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 262
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 153, 249
PflFI GACNNNGTC 2 cut(s) 80, 499
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 5 cut(s) 256, 259, 305, 386, 507
Ple19I CGATCG 1 cut(s) 321
PleI GAGTC 3 cut(s) 77, 422, 508
PpsI GAGTC 3 cut(s) 77, 422, 508
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 88, 441
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 448
PsyI GACNNNGTC 2 cut(s) 80, 499
PvuI CGATCG 1 cut(s) 321
RsaI GTAC 2 cut(s) 194, 272
RsaNI GTAC 2 cut(s) 193, 271
SatI GCNGC 5 cut(s) 255, 258, 304, 385, 506
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 3 cut(s) 78, 422, 509
ScrFI CCNGG 2 cut(s) 206, 268
SduI GDGCHC 1 cut(s) 407
SetI ASST 9 cut(s) 30, 136, 148, 213, 227, 272, 345, 423, 465
SfaNI GCATC 3 cut(s) 102, 123, 337
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 30
SsiI CCGC 5 cut(s) 233, 257, 303, 306, 506
StyD4I CCNGG 2 cut(s) 204, 266
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 370, 395
TaiI ACGT 2 cut(s) 227, 423
TaqI TCGA 5 cut(s) 75, 141, 317, 321, 426
TasI AATT 1 cut(s) 30
TauI GCSGC 3 cut(s) 260, 306, 508
TfiI GAWTC 2 cut(s) 153, 249
TscAI CASTG 2 cut(s) 480, 492
TseI GCWGC 2 cut(s) 254, 384
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 480, 492
Tth111I GACNNNGTC 2 cut(s) 80, 499
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 146
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.