Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005624.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

607 .. 2036

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgaatgatatgggcttgttctatccctacaaagaaatgatggattcggacccatcacacaccaggtacgccgcaaacgctggcctgcgtcactactacacaaaaggcttcacacgacacctctcagacgacgtaacactgttttccgtggtggtcctcatcggcgactccgccgtcggcaagtcaaacctgctctcgcgcttcactaggaacgagtttgatcaaaactccaaggccacaattggggtcgagtttccgacccaggccatggaaatcgacggcaaagaggtcaaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

99

Amino Acids

11.15

Weight (kDa)

5.84

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	51 - 98	6.9e-14	Ras family
Roc	PF08477	51 - 95	3.8e-11	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	72, 171
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	243, 268
AjnI	CCWGG	2 cut(s)	62, 261
AoxI	GGCC	4 cut(s)	82, 234, 264, 294
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	49, 154
AvaII	GGWCC	2 cut(s)	49, 154
BccI	CCATC	2 cut(s)	34, 61
BceAI	ACGGC	2 cut(s)	158, 295
BciT130I	CCWGG	2 cut(s)	64, 263
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	2 cut(s)	207, 298
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	64, 263
Bme18I	GGWCC	2 cut(s)	49, 154
BmgT120I	GGNCC	2 cut(s)	49, 154
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	64, 263
BsaJI	CCNNGG	4 cut(s)	147, 231, 261, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 268
BseBI	CCWGG	2 cut(s)	64, 263
BseDI	CCNNGG	4 cut(s)	147, 231, 261, 267
BseLI	CCNNNNNNNGG	2 cut(s)	243, 268
BseMII	CTCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	84, 236, 266, 296
BslI	CCNNNNNNNGG	2 cut(s)	243, 268
BsnI	GGCC	4 cut(s)	84, 236, 266, 296
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	72, 171
BspANI	GGCC	4 cut(s)	84, 236, 266, 296
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	147, 231, 261, 267
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	2 cut(s)	231, 267
Bst2UI	CCWGG	2 cut(s)	64, 263
Bst4CI	ACNGT	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	2 cut(s)	147, 267
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	64, 263
BstSCI	CCNGG	2 cut(s)	62, 261
BstUI	CGCG	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	84, 236, 266, 296
BtgI	CCRYGG	2 cut(s)	147, 267
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	82, 86
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	49, 154
CseI	GACGC	1 cut(s)	77
CsiI	ACCWGGT	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	15, 84, 108, 236, 266, 296
CviKI_1	RGCY	6 cut(s)	15, 84, 108, 236, 266, 296
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	231, 267
Eco147I	AGGCCT	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	49, 154
EcoRII	CCWGG	2 cut(s)	62, 261
EcoT14I	CCWWGG	2 cut(s)	231, 267
ErhI	CCWWGG	2 cut(s)	231, 267
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	11, 269
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	207, 298
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	84, 236, 266, 296
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	44, 167
Hpy188I	TCNGA	3 cut(s)	49, 127, 258
Hpy99I	CGWCG	3 cut(s)	134, 179, 281
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	49, 66, 76, 98, 203, 248, 275
MabI	ACCWGGT	1 cut(s)	62
MaeI	CTAG	2 cut(s)	207, 298
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	89, 133
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	240
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	3 cut(s)	131, 167, 280
MspR9I	CCNGG	2 cut(s)	64, 263
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	64, 263
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	62, 261
PspGI	CCWGG	2 cut(s)	62, 261
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	49, 154
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	49, 154
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	64, 263
SetI	ASST	5 cut(s)	68, 123, 135, 192, 291
SexAI	ACCWGGT	1 cut(s)	62
SinI	GGWCC	2 cut(s)	49, 154
Sse9I	AATT	1 cut(s)	240
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	72, 171
SspMI	CTAG	2 cut(s)	207, 298
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	62, 261
StyI	CCWWGG	2 cut(s)	231, 267
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	249, 276
TasI	AATT	1 cut(s)	240
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	49, 154
XspI	CTAG	2 cut(s)	207, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.