Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005633.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

580 .. 1761

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgggtctcattggaatggcttcggatgcttatactctaaccattgtcattaattgctacttccatttgaatcatatggggtttagtttgtctgtcttaggccaattcttcaagttgggtcttcaaccagatgtccccaccttcaacaccctaatccacggctttgttctccataatagagtggctgatgcagcacgacttttcagcaaaatgggacgtcattgtcagccggatgtggttacttttagcacactaataaagggctcttgcatgatgggtgacaacactgcagctatgcaattacttaggaagatgggaggaataggatgcgagcctaacatatttacctttaacaccattatcgacagtctttgtaaggatacactagttgatcaagcattgaacctcttcacagaaatgattaccagaggtattgctccagatgttgttacttgtacctctttgattcaaggagtttgcaatataggcaagtggaaagaagctacaaggttgttgaatgaaatggtgagtcaaaatatctttccagatgtcttcaccttcagtgtcttggttgatccactctgtaaagaggggatggttttggaagccaaaactgtggttgacatgatgattcaaagacatattgaacctgatgtggttacatacagttcgcttatggatggttactgtttgcgaggagagatggacgaggtaaaacaagtttttgatttaatggttagcaagggctccatggttaatgttcagtgttgtaccatattgataaatggatattgcaagggtaaaaatatcgataaggcttacaagattttcaaggaaatgcatcatatgaaacttgttcctgatacggttaattataccactcttattggtggtttttgcaaaatggggagaatacaagaagcagaaaagctgttctctcacatgcaacgttgtggccaacatccaagtattcaaacttatgctgttttacttgatgccctacgtagcaaccagcaactttctaaggcaacagaattgcttagagagatgaaggacaagaagttggaactggatattgtaatttacagtattattattgaaggcttgtgcaaagctgggaaaatggattctgcaatagaggtcttctctggtttgtcattaaaggtgtacaacctaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

393

Amino Acids

43.92

Weight (kDa)

6.78

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	38 - 87	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 71	5.6e-09	PPR repeat
PPR_2	PF13041	43 - 90	1e-12	PPR repeat family
PPR_1	PF12854	74 - 105	8e-10	PPR repeat
PPR_3	PF13812	75 - 122	8.5e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	77 - 126	2.6e-13	PPR repeat family
PPR_1	PF12854	109 - 140	8.2e-13	PPR repeat
PPR_2	PF13041	112 - 161	1.4e-16	PPR repeat family
PPR	PF01535	115 - 145	6.5e-06	PPR repeat
PPR_long	PF17177	128 - 247	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	136 - 191	2.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	143 - 176	7.6e-09	PPR repeat
PPR_2	PF13041	147 - 196	2e-16	PPR repeat family
PPR_1	PF12854	179 - 210	1.1e-07	PPR repeat
PPR_2	PF13041	194 - 230	1.2e-08	PPR repeat family
PPR_1	PF12854	214 - 246	9.8e-10	PPR repeat
PPR_2	PF13041	217 - 266	2.3e-13	PPR repeat family
PPR	PF01535	220 - 249	6.1e-08	PPR repeat
PPR_2	PF13041	253 - 290	4.6e-08	PPR repeat family
PPR_1	PF12854	256 - 280	9.1e-07	PPR repeat
PPR	PF01535	257 - 282	1.7e-06	PPR repeat
PPR_long	PF17177	268 - 381	1.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	285 - 315	9.6e-12	PPR repeat
PPR_2	PF13041	287 - 334	8.3e-15	PPR repeat family
TPR_24	PF23276	289 - 383	4.1e-11	Fungal tetratrico peptide repeats
PPR	PF01535	291 - 319	3.3e-08	PPR repeat
PPR_2	PF13041	330 - 371	6.2e-07	PPR repeat family
PPR_1	PF12854	355 - 382	1.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
AatII	GACGTC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	949
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	955
AcuI	CTGAAG	1 cut(s)	544
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	3 cut(s)	457, 772, 1169
AhlI	ACTAGT	1 cut(s)	385
AluBI	AGCT	4 cut(s)	293, 503, 931, 1115
AluI	AGCT	4 cut(s)	293, 503, 931, 1115
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	2 cut(s)	100, 955
ApeKI	GCWGC	2 cut(s)	191, 290
AseI	ATTAAT	1 cut(s)	51
Asp700I	GAANNNNTTC	2 cut(s)	19, 407
AsuHPI	GGTGA	3 cut(s)	290, 538, 547
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BalI	TGGCCA	1 cut(s)	957
BanII	GRGCYC	2 cut(s)	266, 749
BbsI	GAAGAC	3 cut(s)	113, 544, 1135
BbvI	GCAGC	2 cut(s)	203, 302
BccI	CCATC	5 cut(s)	268, 307, 589, 674, 697
BceAI	ACGGC	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	192, 291
BlsI	GCNGC	2 cut(s)	193, 292
BmiI	GGNNCC	1 cut(s)	748
BmsI	GCATC	5 cut(s)	16, 178, 317, 850, 985
BpiI	GAAGAC	3 cut(s)	113, 544, 1135
BplI	GAGNNNNNCTC	2 cut(s)	1130, 1162
BpmI	CTGGAG	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	810
BsaAI	YACGTR	1 cut(s)	1004
BsaHI	GRCGYC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	157, 750
Bse1I	ACTGG	1 cut(s)	1074
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	157, 750
BseGI	GGATG	6 cut(s)	31, 238, 332, 600, 685, 961
BseNI	ACTGG	1 cut(s)	1074
BseRI	GAGGAG	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	203, 302
BseYI	CCCAGC	1 cut(s)	1115
BshFI	GGCC	2 cut(s)	102, 957
BshVI	ATCGAT	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	119, 228
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	119, 228
BsnI	GGCC	2 cut(s)	102, 957
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	266, 749
Bsp1407I	TGTACA	1 cut(s)	1167
Bsp143I	GATC	2 cut(s)	391, 574
Bsp19I	CCATGG	1 cut(s)	750
BspANI	GGCC	2 cut(s)	102, 957
BspDI	ATCGAT	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	748
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	1167
BsrI	ACTGG	1 cut(s)	1074
BssECI	CCNNGG	2 cut(s)	157, 750
BssMI	GATC	2 cut(s)	391, 574
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	750
Bst4CI	ACNGT	6 cut(s)	368, 616, 668, 689, 868, 1088
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	1167
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	97, 305, 1023, 1040
BstDSI	CCRYGG	2 cut(s)	157, 750
BstF5I	GGATG	6 cut(s)	31, 238, 332, 600, 685, 961
BstKTI	GATC	2 cut(s)	394, 577
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	391, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 191, 486
BstNSI	RCATGY	1 cut(s)	946
BstSFI	CTRYAG	1 cut(s)	288
BstSNI	TACGTA	1 cut(s)	1004
BstV1I	GCAGC	2 cut(s)	203, 302
BstV2I	GAAGAC	3 cut(s)	113, 544, 1135
BstXI	CCANNNNNNTGG	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	810
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	102, 957
BsuTUI	ATCGAT	1 cut(s)	810
BtgI	CCRYGG	2 cut(s)	157, 750
BtsCI	GGATG	6 cut(s)	31, 238, 332, 600, 685, 961
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 568, 770
Cac8I	GCNNGC	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	810
Csp6I	GTAC	3 cut(s)	456, 771, 1168
CspCI	CAANNNNNGTGG	2 cut(s)	868, 903
CviAII	CATG	4 cut(s)	271, 625, 751, 943
CviQI	GTAC	3 cut(s)	456, 771, 1168
DdeI	CTNAG	4 cut(s)	97, 305, 1023, 1040
DpnI	GATC	2 cut(s)	393, 576
DpnII	GATC	2 cut(s)	391, 574
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	1004
Eco130I	CCWWGG	1 cut(s)	750
Eco24I	GRGCYC	2 cut(s)	266, 749
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	843
EcoT38I	GRGCYC	2 cut(s)	266, 749
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	4 cut(s)	274, 628, 754, 946
FaqI	GGGAC	2 cut(s)	119, 228
FatI	CATG	4 cut(s)	270, 624, 750, 942
FauNDI	CATATG	2 cut(s)	75, 846
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	192, 291
FokI	GGATG	6 cut(s)	38, 245, 339, 607, 692, 948
FriOI	GRGCYC	2 cut(s)	266, 749
Fsp4HI	GCNGC	2 cut(s)	192, 291
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	192, 291
GsaI	CCCAGC	1 cut(s)	1119
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	102, 957
HapII	CCGG	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	274, 628, 754, 946
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	70, 466, 529, 631, 1127
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	290, 538, 547
Hpy166II	GTNNAC	2 cut(s)	622, 1168
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	440, 545, 860
Hpy8I	GTNNAC	2 cut(s)	622, 1168
HpyAV	CCTTC	4 cut(s)	151, 568, 1045, 1094
HpyCH4III	ACNGT	6 cut(s)	368, 616, 668, 689, 868, 1088
HpyCH4IV	ACGT	3 cut(s)	217, 949, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 191, 486
HpyF3I	CTNAG	4 cut(s)	97, 305, 1023, 1040
HpySE526I	ACGT	3 cut(s)	217, 949, 1003
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	274, 628, 754, 946
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	391, 574
LmnI	GCTCC	2 cut(s)	442, 752
Lsp1109I	GCAGC	2 cut(s)	203, 302
LweI	GCATC	5 cut(s)	16, 178, 317, 850, 985
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	3 cut(s)	217, 949, 1003
MaeIII	GTNAC	5 cut(s)	238, 278, 448, 658, 683
MalI	GATC	2 cut(s)	393, 576
MboI	GATC	2 cut(s)	391, 574
MboII	GAAGA	6 cut(s)	100, 113, 322, 400, 544, 1135
MhlI	GDGCHC	2 cut(s)	266, 749
MlsI	TGGCCA	1 cut(s)	957
MluCI	AATT	6 cut(s)	52, 104, 299, 871, 1034, 1080
MluNI	TGGCCA	1 cut(s)	957
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	1044
MnlI	CCTC	8 cut(s)	311, 416, 422, 469, 583, 689, 703, 1132
Mox20I	TGGCCA	1 cut(s)	957
Mph1103I	ATGCAT	1 cut(s)	843
MroXI	GAANNNNTTC	2 cut(s)	19, 407
MscI	TGGCCA	1 cut(s)	957
MseI	TTAA	6 cut(s)	51, 351, 731, 756, 870, 1160
MslI	CAYNNNNRTG	2 cut(s)	14, 416
Msp20I	TGGCCA	1 cut(s)	957
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	26, 191, 486
NcoI	CCATGG	1 cut(s)	750
NdeI	CATATG	2 cut(s)	75, 846
NdeII	GATC	2 cut(s)	391, 574
NlaIII	CATG	4 cut(s)	274, 628, 754, 946
NlaIV	GGNNCC	1 cut(s)	748
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	843
NspI	RCATGY	1 cut(s)	946
PdmI	GAANNNNTTC	2 cut(s)	19, 407
PfeI	GAWTC	4 cut(s)	70, 466, 631, 1127
PkrI	GCNGC	2 cut(s)	193, 292
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Ppu21I	YACGTR	1 cut(s)	1004
PshBI	ATTAAT	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	949
PspFI	CCCAGC	1 cut(s)	1115
PspN4I	GGNNCC	1 cut(s)	748
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	3 cut(s)	457, 772, 1169
RsaNI	GTAC	3 cut(s)	456, 771, 1168
RseI	CAYNNNNRTG	2 cut(s)	14, 416
SaqAI	TTAA	6 cut(s)	51, 351, 731, 756, 870, 1160
SatI	GCNGC	2 cut(s)	192, 291
Sau3AI	GATC	2 cut(s)	391, 574
SchI	GAGTC	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	266, 749
SfaNI	GCATC	5 cut(s)	16, 178, 317, 850, 985
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	14, 416
SnaBI	TACGTA	1 cut(s)	1004
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	6 cut(s)	52, 104, 299, 871, 1034, 1080
SspMI	CTAG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	6 cut(s)	368, 616, 668, 689, 868, 1088
TaiI	ACGT	3 cut(s)	220, 952, 1006
TaqI	TCGA	2 cut(s)	363, 810
TasI	AATT	6 cut(s)	52, 104, 299, 871, 1034, 1080
TatI	WGTACW	1 cut(s)	1167
TfiI	GAWTC	4 cut(s)	70, 466, 631, 1127
Tru1I	TTAA	6 cut(s)	51, 351, 731, 756, 870, 1160
Tru9I	TTAA	6 cut(s)	51, 351, 731, 756, 870, 1160
TscAI	CASTG	3 cut(s)	292, 568, 770
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	191, 290
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	534, 863, 1064
TspRI	CASTG	3 cut(s)	292, 568, 770
VspI	ATTAAT	1 cut(s)	51
XceI	RCATGY	1 cut(s)	946
XmnI	GAANNNNTTC	2 cut(s)	19, 407
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.