Rmu_sc0005640.1_g000002

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005640.1
N/A
Physical Location & Seq
Reverse (-)
5316 .. 5797
482 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
atgattagtgagattagtgctgatggaaatggaacaatagattttgaagagttcttgaatatcatggcaaggaagatgcaggaaaacgttgctgaggagctaaaagaagcattcaaagtatttgacagggatcaagacggttatatttcagcttctgagttgagacaggtgatgataaatttgggagaaagattgagcaatgaagaggctgagcaaatgatcagagaggctgatttggatggtgacggtctagttagctatgaagaatttgcaaggatgatgctcagctag

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

4.13

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_8 PF13833 10 - 58 3e-09 EF-hand domain pair
AIF-1 PF21008 31 - 95 5e-06 Allograft inflammatory factor 1
EF-hand_7 PF13499 32 - 94 5.7e-20 EF-hand domain pair
EF-hand_1 PF00036 33 - 60 1.5e-09 EF hand domain
EF-hand_6 PF13405 33 - 62 7.5e-10 EF-hand domain
EF-hand_5 PF13202 34 - 58 1.8e-08 EF hand
EF-hand_8 PF13833 54 - 94 9.1e-08 EF-hand domain pair
EF-hand_1 PF00036 69 - 94 5.8e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 87
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 178, 266
AgsI TTSAA 3 cut(s) 47, 58, 115
AluBI AGCT 4 cut(s) 100, 152, 258, 288
AluI AGCT 4 cut(s) 100, 152, 258, 288
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 155
ApoI RAATTY 2 cut(s) 178, 266
AsuHPI GGTGA 2 cut(s) 181, 254
BbvCI CCTCAGC 1 cut(s) 93
BccI CCATC 2 cut(s) 17, 233
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 251, 289
BlpI GCTNAGC 2 cut(s) 210, 284
BmsI GCATC 2 cut(s) 66, 270
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 2 cut(s) 210, 284
Bse3DI GCAATG 1 cut(s) 205
BseGI GGATG 2 cut(s) 244, 282
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 84, 147, 201
BseRI GAGGAG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 130, 219
Bsp1720I GCTNAGC 2 cut(s) 210, 284
BspCNI CTCAG 3 cut(s) 85, 148, 202
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 205
BssMI GATC 2 cut(s) 130, 219
Bst4CI ACNGT 2 cut(s) 140, 248
Bst6I CTCTTC 2 cut(s) 42, 198
BstDEI CTNAG 4 cut(s) 93, 156, 210, 284
BstF5I GGATG 2 cut(s) 244, 282
BstKTI GATC 2 cut(s) 133, 222
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 130, 219
BtsCI GGATG 2 cut(s) 244, 282
CaiI CAGNNNCTG 1 cut(s) 155
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 100, 152, 209, 230, 258, 288
CviKI_1 RGCY 6 cut(s) 100, 152, 209, 230, 258, 288
DdeI CTNAG 4 cut(s) 93, 156, 210, 284
DpnI GATC 2 cut(s) 132, 221
DpnII GATC 2 cut(s) 130, 219
Eam1104I CTCTTC 2 cut(s) 42, 198
EarI CTCTTC 2 cut(s) 42, 198
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 144, 261
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 219
FokI GGATG 1 cut(s) 251
FspBI CTAG 2 cut(s) 251, 289
Hin1II CATG 1 cut(s) 67
HphI GGTGA 2 cut(s) 181, 254
Hpy188I TCNGA 2 cut(s) 157, 224
Hpy188III TCNNGA 2 cut(s) 55, 134
HpyCH4III ACNGT 2 cut(s) 140, 248
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 79, 272
HpyF3I CTNAG 4 cut(s) 93, 156, 210, 284
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 2 cut(s) 130, 219
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 65, 112, 152
LweI GCATC 2 cut(s) 66, 270
MaeI CTAG 2 cut(s) 251, 289
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 132, 221
MboI GATC 2 cut(s) 130, 219
MboII GAAGA 4 cut(s) 59, 85, 215, 275
MluCI AATT 2 cut(s) 178, 266
MnlI CCTC 3 cut(s) 88, 199, 220
Mva1269I GAATGC 1 cut(s) 110
NdeII GATC 2 cut(s) 130, 219
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 242
PctI GAATGC 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 155
Sau3AI GATC 2 cut(s) 130, 219
SetI ASST 6 cut(s) 90, 102, 154, 171, 260, 290
SfaNI GCATC 2 cut(s) 66, 270
SgeI CNNG 9 cut(s) 67, 76, 81, 92, 139, 146, 179, 263, 285
Sse9I AATT 2 cut(s) 178, 266
SspMI CTAG 2 cut(s) 251, 289
TaaI ACNGT 2 cut(s) 140, 248
TaiI ACGT 1 cut(s) 90
TasI AATT 2 cut(s) 178, 266
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 216, 276
XapI RAATTY 2 cut(s) 178, 266
XspI CTAG 2 cut(s) 251, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.