Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005645.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

78338 .. 80831

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggctctcctccaggcacagacatccccccatatccatacctatagctttagcttcaaaacccatagccgctttccggtgctcttatcattccaacccccaccacctgtttctctcacctccgtgaaaacccatcaccaaaactcactcttttctaagaacacgccgtcttcactctcaacaacgccaagaaaggtgctttgcagaccccctcatggcaaacatgtcagagaagactatcttgtgccagccaccatctttgctgcacaaccaagctcagaagcacaaccattcatccagagagatcaattatcaagaacgattgagagagagagagagaggtaccgtctgtttctccaattcagttctctccaatttagacgaatcagaaactactccagctctgttttcacaatccaaaagaaagaaagaaaatccaattccgaactccttcgatcgtctttgtcagcttacaagggatttccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008219 GO:0009295 GO:0009507 GO:0009536 GO:0009579 GO:0009636 GO:0009657 GO:0009987 GO:0010363 GO:0010941 GO:0015035 GO:0015036 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031347 GO:0031348 GO:0033554 GO:0034051 GO:0034599 GO:0042221 GO:0042592 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045454 GO:0045824 GO:0047134 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0080134 GO:0080135 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

162

Amino Acids

18.73

Weight (kDa)

10.81

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AciI	CCGC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	76, 215
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	5 cut(s)	48, 54, 276, 402, 470
AluI	AGCT	5 cut(s)	48, 54, 276, 402, 470
Alw21I	GWGCWC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	109, 128
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	162, 240
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	141, 263
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	43
BisI	GCNGC	2 cut(s)	70, 264
BlsI	GCNGC	2 cut(s)	71, 265
Bme1390I	CCNGG	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	162, 240
BpmI	CTGGAG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 215
BseBI	CCWGG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	23, 294
BseLI	CCNNNNNNNGG	2 cut(s)	76, 215
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	76, 215
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	304, 455
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	342
BssMI	GATC	2 cut(s)	304, 455
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	156, 277
BstF5I	GGATG	2 cut(s)	23, 294
BstKTI	GATC	2 cut(s)	307, 458
BstMBI	GATC	2 cut(s)	304, 455
BstMCI	CGRYCG	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	2 cut(s)	162, 240
BtsCI	GGATG	2 cut(s)	23, 294
Cac8I	GCNNGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	215, 224
CviJI	RGCY	8 cut(s)	5, 48, 54, 69, 251, 276, 402, 470
CviKI_1	RGCY	8 cut(s)	5, 48, 54, 69, 251, 276, 402, 470
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	156, 277
DpnI	GATC	2 cut(s)	306, 457
DpnII	GATC	2 cut(s)	304, 455
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	218, 227
FaiI	YATR	6 cut(s)	33, 39, 45, 66, 216, 225
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	2 cut(s)	214, 223
Fnu4HI	GCNGC	2 cut(s)	70, 264
FokI	GGATG	2 cut(s)	10, 281
Fsp4HI	GCNGC	2 cut(s)	70, 264
GluI	GCNGC	2 cut(s)	70, 264
GsuI	CTGGAG	1 cut(s)	382
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	218, 227
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	109, 128
Hpy188I	TCNGA	4 cut(s)	230, 280, 389, 445
Hpy188III	TCNNGA	2 cut(s)	298, 315
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	204, 266
HpyF3I	CTNAG	2 cut(s)	156, 277
Hsp92II	CATG	2 cut(s)	218, 227
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	304, 455
LpnPI	CCDG	6 cut(s)	26, 90, 120, 261, 311, 412
Lsp1109I	GCAGC	1 cut(s)	250
MalI	GATC	2 cut(s)	306, 457
MboI	GATC	2 cut(s)	304, 455
MboII	GAAGA	2 cut(s)	162, 245
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	4 cut(s)	308, 359, 374, 439
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	20, 130, 222, 333
MroXI	GAANNNNTTC	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	304, 455
NlaIII	CATG	2 cut(s)	218, 227
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	71, 265
Ple19I	CGATCG	1 cut(s)	458
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	70, 264
Sau3AI	GATC	2 cut(s)	304, 455
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	308, 359, 374, 439
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	454
TasI	AATT	4 cut(s)	308, 359, 374, 439
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	112, 474
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.