Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005656.1

Orthogroup ID

OG0031347

Physical Location & Seq

Genomic Coordinates Reverse (-)

34229 .. 35394

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaattcattgcaagataatacacttatacctactcaatggagtttgtcacttaggatttcggagtccttcccttgtcttcatgataaagtgcttgcagctgctacagatgtcattgctgatttatctcaaagacagaaacagagtgctgcccataggattttaggaggtatcattaagggcttaaaaactggtaaaacggatcaaaacatggaccagactggaaatcatgaaaaatattgtgcgaatttggagagcttattttcgaatcccccattcttaaaaccttccacagatgtgaaggatggccaagaacccgtggtgcttaacctagatgatattgtaattgatggccctattactgtcttgcctaaagatccaaacaagaagaatgaaaagacagacaagggatcagagaagaaaaagttatttgaaggcgcaccaagtgatacaaagccaaaaatgaggacagctgctgaaatcaaggctaaatatagagaaactggggatgtctctgcagcagctgcacgtgcaagagatatgcttgccgaacgtggggaaaaacttgagaaactcagagaaaacacagaagaactatcgagtggggctcaagacttcgcatcgatggcaaaggaactcgccaagagaatggagaatcgtaaatggtggcacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

225

Amino Acids

25.03

Weight (kDa)

8.4

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	180 - 222	1.8e-07	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031347)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005656.1_g000007
rosa_wichuraiana	Rw1G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	210, 371, 418
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	4, 247
AcvI	CACGTG	1 cut(s)	530
AdeI	CACNNNGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	434
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	4 cut(s)	101, 258, 473, 524
AluI	AGCT	4 cut(s)	101, 258, 473, 524
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	210, 371, 418
AlwNI	CAGNNNCTG	2 cut(s)	476, 524
AoxI	GGCC	2 cut(s)	307, 352
ApeKI	GCWGC	7 cut(s)	98, 101, 149, 473, 518, 521, 524
ApoI	RAATTY	2 cut(s)	4, 247
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	214, 353
AsuII	TTCGAA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	610
BbrPI	CACGTG	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	7 cut(s)	88, 110, 136, 460, 511, 530, 533
BccI	CCATC	3 cut(s)	299, 344, 619
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	105, 516
BisI	GCNGC	7 cut(s)	99, 102, 150, 474, 519, 522, 525
BlsI	GCNGC	7 cut(s)	100, 103, 151, 475, 520, 523, 526
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	214, 353
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	587, 594
Bsa29I	ATCGAT	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	3 cut(s)	196, 226, 508
Bse3DI	GCAATG	2 cut(s)	8, 114
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	310, 514
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMI	GCAATG	2 cut(s)	8, 114
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	3 cut(s)	196, 226, 508
BseXI	GCAGC	7 cut(s)	88, 110, 136, 460, 511, 530, 533
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	309, 354
BshVI	ATCGAT	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	309, 354
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	202, 376, 410
BspANI	GGCC	2 cut(s)	309, 354
BspCNI	CTCAG	1 cut(s)	588
BspDI	ATCGAT	1 cut(s)	623
BspHI	TCATGA	2 cut(s)	82, 229
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	3 cut(s)	210, 371, 418
BspT104I	TTCGAA	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	8, 114
BsrI	ACTGG	3 cut(s)	196, 226, 508
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	202, 376, 410
Bst4CI	ACNGT	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	530
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	96, 546
BstDEI	CTNAG	2 cut(s)	53, 575
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	310, 514
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	3 cut(s)	205, 379, 413
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	3 cut(s)	202, 376, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 530, 626
BstSFI	CTRYAG	2 cut(s)	105, 516
BstV1I	GCAGC	7 cut(s)	88, 110, 136, 460, 511, 530, 533
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	309, 354
BsuTUI	ATCGAT	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	310, 514
Cac8I	GCNNGC	2 cut(s)	96, 546
CaiI	CAGNNNCTG	2 cut(s)	476, 524
CciI	TCATGA	2 cut(s)	82, 229
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	214, 353
ClaI	ATCGAT	1 cut(s)	623
CviAII	CATG	3 cut(s)	83, 211, 230
DdeI	CTNAG	2 cut(s)	53, 575
DpnI	GATC	3 cut(s)	204, 378, 412
DpnII	GATC	3 cut(s)	202, 376, 410
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	610
FaeI	CATG	3 cut(s)	86, 214, 233
FaiI	YATR	9 cut(s)	29, 84, 156, 212, 231, 495, 542, 674, 676
FatI	CATG	3 cut(s)	82, 210, 229
FauNDI	CATATG	1 cut(s)	674
Fnu4HI	GCNGC	7 cut(s)	99, 102, 150, 474, 519, 522, 525
FokI	GGATG	2 cut(s)	317, 521
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	7 cut(s)	99, 102, 150, 474, 519, 522, 525
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	7 cut(s)	99, 102, 150, 474, 519, 522, 525
HaeIII	GGCC	2 cut(s)	309, 354
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	86, 214, 233
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	3 cut(s)	65, 268, 655
Hpy188I	TCNGA	3 cut(s)	64, 415, 578
Hpy188III	TCNNGA	3 cut(s)	83, 230, 611
HpyAV	CCTTC	4 cut(s)	79, 295, 297, 428
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	529, 553
HpyCH4V	TGCA	5 cut(s)	13, 98, 518, 527, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 530, 626
HpyF3I	CTNAG	2 cut(s)	53, 575
HpySE526I	ACGT	2 cut(s)	529, 553
Hsp92II	CATG	3 cut(s)	86, 214, 233
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	3 cut(s)	202, 376, 410
LpnPI	CCDG	4 cut(s)	177, 207, 230, 489
Lsp1109I	GCAGC	7 cut(s)	88, 110, 136, 460, 511, 530, 533
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	529, 553
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	204, 378, 412
MboI	GATC	3 cut(s)	202, 376, 410
MboII	GAAGA	4 cut(s)	71, 400, 430, 602
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	3 cut(s)	4, 247, 345
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	161, 459
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	4 cut(s)	177, 185, 281, 327
MslI	CAYNNNNRTG	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	3 cut(s)	101, 473, 524
MwoI	GCNNNNNNNGC	3 cut(s)	524, 530, 626
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	3 cut(s)	202, 376, 410
NlaIII	CATG	3 cut(s)	86, 214, 233
NmuCI	GTSAC	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	296
PagI	TCATGA	2 cut(s)	82, 229
PfeI	GAWTC	2 cut(s)	268, 655
PkrI	GCNGC	7 cut(s)	100, 103, 151, 475, 520, 523, 526
PleI	GAGTC	1 cut(s)	73
PmaCI	CACGTG	1 cut(s)	530
PmlI	CACGTG	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	530
PspPI	GGNCC	2 cut(s)	214, 353
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	476, 524
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	3 cut(s)	101, 473, 524
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	177, 185, 281, 327
SatI	GCNGC	7 cut(s)	99, 102, 150, 474, 519, 522, 525
Sau3AI	GATC	3 cut(s)	202, 376, 410
Sau96I	GGNCC	2 cut(s)	214, 353
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	2 cut(s)	105, 516
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	566, 609
SmoI	CTYRAG	2 cut(s)	566, 609
Sse9I	AATT	3 cut(s)	4, 247, 345
SspI	AATATT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	532, 556
TaqI	TCGA	3 cut(s)	266, 599, 623
TasI	AATT	3 cut(s)	4, 247, 345
TfiI	GAWTC	2 cut(s)	268, 655
Tru1I	TTAA	4 cut(s)	177, 185, 281, 327
Tru9I	TTAA	4 cut(s)	177, 185, 281, 327
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	7 cut(s)	98, 101, 149, 473, 518, 521, 524
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	17, 71, 246, 408
TspGWI	ACGGA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	4, 247
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.