Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005659.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11717 .. 16327

Gene Structure 4611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgaatcaccaccacagacgtgtagaggggattgaggagagcaggattccctttggaatcaaagcaaaaggtgaccggaggaggaagaacgacgccggcgaaggtgagaagtgcgggcttgcggtggccgaggctggcggactgaaagctcttcagggaggctgtggggtgtccatagctgtttcaacaacttatgcttcatgctctcctcctgggtttgtggattggaaccatcttgatgaggagatgaacaagaggcgaaagaactggaagaaaaagagttcatcagactggggtgatccaaaagcaggaagctgcaatggacaaacagaaccacttacaggtccaagctatcctcatgtacatccagcagagaaagtattagagaaagtattacgcgccatgccaaagccagtccaattgcttgatgtcacaaatctttcacaactaagaaaagatgggcacccctctttctatggccttggtgggcacagagcctcggactgcagccattggtgtttagctggagttcctgatacttggaacattcttctttatgcagctcttgcaggaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

192

Amino Acids

20.86

Weight (kDa)

8.89

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	94 - 187	6e-28	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	462
AccII	CGCG	1 cut(s)	399
AciI	CCGC	3 cut(s)	114, 122, 138
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	308, 341
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	186
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	6 cut(s)	149, 179, 315, 351, 524, 563
AluI	AGCT	6 cut(s)	149, 179, 315, 351, 524, 563
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	126, 478
ApeKI	GCWGC	3 cut(s)	315, 507, 560
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	83, 116, 308
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	2 cut(s)	465, 492
BanI	GGYRCC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	302, 519, 572
BccI	CCATC	2 cut(s)	240, 452
BciT130I	CCWGG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	3 cut(s)	316, 508, 561
BlsI	GCNGC	3 cut(s)	317, 509, 562
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	344
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	230, 464
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	129, 212, 481, 498
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 341
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	3 cut(s)	272, 296, 413
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	4 cut(s)	129, 212, 481, 498
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	308, 341
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	3 cut(s)	272, 296, 413
BseRI	GAGGAG	4 cut(s)	50, 94, 198, 257
BseSI	GKGCMC	2 cut(s)	465, 492
BseXI	GCAGC	3 cut(s)	302, 519, 572
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	128, 480
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	76, 96
BslI	CCNNNNNNNGG	2 cut(s)	308, 341
BsnI	GGCC	2 cut(s)	128, 480
Bsp1286I	GDGCHC	2 cut(s)	465, 492
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	3 cut(s)	114, 122, 138
BspANI	GGCC	2 cut(s)	128, 480
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	230, 464
BspMAI	CTGCAG	1 cut(s)	509
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	272, 296, 413
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	129, 212, 481, 498
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	4 cut(s)	97, 116, 120, 136
BstDEI	CTNAG	1 cut(s)	449
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	2 cut(s)	465, 492
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	302, 519, 572
BsuRI	GGCC	2 cut(s)	128, 480
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	4 cut(s)	97, 116, 120, 136
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	3 cut(s)	201, 359, 403
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	204, 362, 406
FaiI	YATR	7 cut(s)	176, 195, 202, 360, 404, 477, 558
FatI	CATG	3 cut(s)	200, 358, 402
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	316, 508, 561
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	316, 508, 561
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	3 cut(s)	316, 508, 561
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	128, 480
HapII	CCGG	2 cut(s)	76, 96
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	204, 362, 406
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	4, 46, 57
HpaII	CCGG	2 cut(s)	76, 96
HphI	GGTGA	3 cut(s)	83, 116, 308
Hpy188I	TCNGA	2 cut(s)	289, 502
Hpy188III	TCNNGA	2 cut(s)	236, 533
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	318, 507, 560, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	204, 362, 406
HspAI	GCGC	1 cut(s)	399
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	302, 519, 572
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	71, 430
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	97, 143, 283, 542
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	465, 492
MluCI	AATT	1 cut(s)	419
MreI	CGCCGGCG	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	2 cut(s)	18, 237
MspI	CCGG	2 cut(s)	76, 96
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	566
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	204, 362, 406
NlaIV	GGNNCC	2 cut(s)	230, 464
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	71, 430
OliI	CACNNNNGTG	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	4, 46, 57
PkrI	GCNGC	3 cut(s)	317, 509, 562
Psp6I	CCWGG	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	230, 464
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	2 cut(s)	18, 237
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	3 cut(s)	316, 508, 561
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	465, 492
SfcI	CTRYAG	1 cut(s)	505
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	2 cut(s)	18, 237
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	3 cut(s)	114, 122, 138
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	481
TaiI	ACGT	1 cut(s)	22
TasI	AATT	1 cut(s)	419
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	4, 46, 57
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	71, 430
TseI	GCWGC	3 cut(s)	315, 507, 560
Tsp45I	GTSAC	2 cut(s)	71, 430
TspDTI	ATGAA	4 cut(s)	17, 189, 263, 273
VpaK11BI	GGWCC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.