Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005659.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

125069 .. 128201

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggtggtcactcttctgcactaccatgtacatggagatcatcagcagaagcattctgacagggaaactaaagaagctggaaatgaaggatgtgatatgttccaagggaggtgggtttccgatgagtcatatccgctctacaattcatcacaatgctccttcgtagtatctatggcacccgaatacaatgttaaggtgatgttctctcggaatgcatttctggtcgatacaatagcaacacctgctggccgagttcttaagctcgactctattgaaagtgggaaactttggaagggaattgacttcttgatcttcaacacatggcactggtggctgcacactggaaggaagcaaccttgggatcttattcaagaaggaaacagtacctataaagacatggaccggttggttgcgtatgagaaagggctcaaaacatgggctaaatggactgatcgacgacgtggcattggagtggaggatcaggttaacctgatcgtaggtgttggagtaccttggttgaagaggcggtcggaggagaagccgtcttcgatgattgacatggtggcgcctctgcgacaaggagggaaggagggagggagagtgatcttcaccagtgcaagtgattggaaggatcctactgcaaaaacttgtgagggacaaatgcaaccagtggccgggtctcagtatccagcaggaccacatccagcagagcaagtagtagaaagagtattgcgttccatgtcatttcgagtttatttgctaaacgtgacgaccctttcacaactaagaaaagatgggcatccatctgtgtacggccatggtggtcacaaggacatggattgcagccattggtgtcttgctggagttccggatacatggaatgaactcctatatgctgctcttatacaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

304

Amino Acids

34.49

Weight (kDa)

7.2

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	30 - 56	2.7e-08	PMR5 N terminal Domain
PC-Esterase	PF13839	47 - 153	1.1e-23	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	206 - 299	1e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	2 cut(s)	175, 565
AccBSI	CCGCTC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	2 cut(s)	134, 526
AclWI	GGATC	4 cut(s)	369, 486, 626, 639
AcoI	YGGCCR	3 cut(s)	247, 672, 814
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	4 cut(s)	30, 385, 510, 812
AfiI	CCNNNNNNNGG	1 cut(s)	674
AflII	CTTAAG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	275, 316, 371, 520
AjiI	CACGTC	1 cut(s)	461
AluBI	AGCT	3 cut(s)	77, 262, 912
AluI	AGCT	3 cut(s)	77, 262, 912
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	4 cut(s)	369, 486, 626, 639
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	3 cut(s)	247, 672, 814
ApeKI	GCWGC	3 cut(s)	334, 843, 896
AsiGI	ACCGGT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	400, 695
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	2 cut(s)	208, 601
AvaII	GGWCC	2 cut(s)	400, 695
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	2 cut(s)	175, 565
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	321, 855, 883
BccI	CCATC	2 cut(s)	788, 811
BceAI	ACGGC	2 cut(s)	526, 829
BciVI	GTATCC	2 cut(s)	696, 865
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	1 cut(s)	913
BfoI	RGCGCY	1 cut(s)	569
BfrI	CTTAAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	250
BfuI	GTATCC	2 cut(s)	696, 865
BisI	GCNGC	3 cut(s)	335, 844, 897
BlsI	GCNGC	3 cut(s)	336, 845, 898
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	2 cut(s)	400, 695
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	400, 695
BmiI	GGNNCC	3 cut(s)	177, 567, 633
BmrFI	CCNGG	1 cut(s)	676
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	4 cut(s)	103, 356, 512, 817
BsaWI	WCCGGW	2 cut(s)	402, 868
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	4 cut(s)	332, 346, 612, 668
Bse8I	GATNNNNATC	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	868
BseDI	CCNNGG	4 cut(s)	103, 356, 512, 817
BseGI	GGATG	3 cut(s)	95, 700, 799
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	4 cut(s)	332, 346, 612, 668
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	321, 855, 883
BsgI	GTGCAG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	249, 674, 816
BshNI	GGYRCC	2 cut(s)	175, 565
BshTI	ACCGGT	1 cut(s)	402
BsiEI	CGRYCG	1 cut(s)	530
BsiSI	CCGG	3 cut(s)	403, 675, 869
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	2 cut(s)	52, 217
BsnI	GGCC	3 cut(s)	249, 674, 816
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	868
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
Bsp19I	CCATGG	1 cut(s)	817
BspACI	CCGC	2 cut(s)	134, 526
BspANI	GGCC	3 cut(s)	249, 674, 816
BspCNI	CTCAG	1 cut(s)	694
BspEI	TCCGGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	177, 567, 633
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	4 cut(s)	369, 486, 626, 639
BspT107I	GGYRCC	2 cut(s)	175, 565
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	684
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	4 cut(s)	332, 346, 612, 668
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	4 cut(s)	103, 356, 512, 817
BssMI	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	4 cut(s)	103, 356, 512, 817
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	18, 515
BstACI	GRCGYC	1 cut(s)	566
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	681, 785
BstDSI	CCRYGG	1 cut(s)	817
BstF5I	GGATG	3 cut(s)	95, 700, 799
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	8 cut(s)	40, 312, 364, 454, 481, 495, 606, 634
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 331
BstSCI	CCNGG	1 cut(s)	674
BstV1I	GCAGC	3 cut(s)	321, 855, 883
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	361, 631
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	2 cut(s)	361, 631
BsuI	GTATCC	2 cut(s)	696, 865
BsuRI	GGCC	3 cut(s)	249, 674, 816
BtgI	CCRYGG	1 cut(s)	817
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	95, 700, 799
BtsIMutI	CAGTG	4 cut(s)	325, 339, 619, 675
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	400, 695
Csp6I	GTAC	4 cut(s)	29, 384, 509, 811
CspAI	ACCGGT	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviQI	GTAC	4 cut(s)	29, 384, 509, 811
DdeI	CTNAG	2 cut(s)	681, 785
DinI	GGCGCC	1 cut(s)	567
DpnI	GATC	8 cut(s)	39, 311, 363, 453, 480, 494, 605, 633
DpnII	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
EaeI	YGGCCR	3 cut(s)	247, 672, 814
Eam1104I	CTCTTC	2 cut(s)	18, 515
EarI	CTCTTC	2 cut(s)	18, 515
Eco130I	CCWWGG	4 cut(s)	103, 356, 512, 817
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	400, 695
EcoT14I	CCWWGG	4 cut(s)	103, 356, 512, 817
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	567
EheI	GGCGCC	1 cut(s)	567
ErhI	CCWWGG	4 cut(s)	103, 356, 512, 817
FaqI	GGGAC	1 cut(s)	669
Fnu4HI	GCNGC	3 cut(s)	335, 844, 897
FokI	GGATG	3 cut(s)	102, 687, 786
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	3 cut(s)	335, 844, 897
FspBI	CTAG	1 cut(s)	913
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	3 cut(s)	335, 844, 897
GsuI	CTGGAG	1 cut(s)	882
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	249, 674, 816
HapII	CCGG	3 cut(s)	403, 675, 869
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	2 cut(s)	125, 266
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	3 cut(s)	403, 675, 869
HphI	GGTGA	2 cut(s)	208, 601
Hpy166II	GTNNAC	2 cut(s)	487, 811
Hpy188I	TCNGA	4 cut(s)	58, 121, 210, 532
Hpy188III	TCNNGA	3 cut(s)	307, 371, 869
Hpy8I	GTNNAC	2 cut(s)	487, 811
Hpy99I	CGWCG	2 cut(s)	459, 462
HpyAV	CCTTC	7 cut(s)	80, 169, 286, 339, 368, 580, 622
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	460, 765
HpyCH4V	TGCA	7 cut(s)	19, 215, 337, 617, 641, 664, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 331
HpyF3I	CTNAG	2 cut(s)	681, 785
HpySE526I	ACGT	2 cut(s)	460, 765
Hsp92I	GRCGYC	1 cut(s)	566
HspAI	GCGC	1 cut(s)	566
KasI	GGCGCC	1 cut(s)	565
Kpn2I	TCCGGA	1 cut(s)	868
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	3 cut(s)	321, 855, 883
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	1 cut(s)	913
MaeII	ACGT	2 cut(s)	460, 765
MaeIII	GTNAC	3 cut(s)	7, 766, 824
MalI	GATC	8 cut(s)	39, 311, 363, 453, 480, 494, 605, 633
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
MboII	GAAGA	5 cut(s)	5, 304, 532, 537, 598
MflI	RGATCY	2 cut(s)	361, 631
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	2 cut(s)	142, 297
Mly113I	GGCGCC	1 cut(s)	566
MlyI	GAGTC	2 cut(s)	134, 260
MmeI	TCCRAC	2 cut(s)	484, 510
MnlI	CCTC	9 cut(s)	102, 469, 516, 526, 575, 579, 583, 587, 646
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	868
MseI	TTAA	3 cut(s)	192, 258, 486
MslI	CAYNNNNRTG	4 cut(s)	24, 30, 151, 470
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	3 cut(s)	403, 675, 869
MspR9I	CCNGG	1 cut(s)	676
Mva1269I	GAATGC	2 cut(s)	52, 217
MwoI	GCNNNNNNNGC	2 cut(s)	242, 331
NarI	GGCGCC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	676
NcoI	CCATGG	1 cut(s)	817
NdeII	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
NlaIV	GGNNCC	3 cut(s)	177, 567, 633
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	3 cut(s)	7, 766, 824
NsiI	ATGCAT	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	250
PctI	GAATGC	2 cut(s)	52, 217
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	336, 845, 898
PleI	GAGTC	2 cut(s)	133, 260
PluTI	GGCGCC	1 cut(s)	569
PpsI	GAGTC	2 cut(s)	133, 260
PspN4I	GGNNCC	3 cut(s)	177, 567, 633
PspPI	GGNCC	2 cut(s)	400, 695
PsuI	RGATCY	2 cut(s)	361, 631
RsaI	GTAC	4 cut(s)	30, 385, 510, 812
RsaNI	GTAC	4 cut(s)	29, 384, 509, 811
RseI	CAYNNNNRTG	4 cut(s)	24, 30, 151, 470
SaqAI	TTAA	3 cut(s)	192, 258, 486
SatI	GCNGC	3 cut(s)	335, 844, 897
Sau3AI	GATC	8 cut(s)	37, 309, 361, 451, 478, 492, 603, 631
Sau96I	GGNCC	2 cut(s)	400, 695
SchI	GAGTC	2 cut(s)	134, 260
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	808
SfoI	GGCGCC	1 cut(s)	567
SinI	GGWCC	2 cut(s)	400, 695
SmiMI	CAYNNNNRTG	4 cut(s)	24, 30, 151, 470
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	142, 297
SsiI	CCGC	2 cut(s)	134, 526
SspDI	GGCGCC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	913
StyD4I	CCNGG	1 cut(s)	674
StyI	CCWWGG	4 cut(s)	103, 356, 512, 817
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	463, 768
TaqI	TCGA	5 cut(s)	225, 264, 454, 548, 748
TasI	AATT	2 cut(s)	142, 297
TatI	WGTACW	1 cut(s)	28
Tru1I	TTAA	3 cut(s)	192, 258, 486
Tru9I	TTAA	3 cut(s)	192, 258, 486
TscAI	CASTG	4 cut(s)	332, 346, 619, 675
TseFI	GTSAC	3 cut(s)	7, 766, 824
TseI	GCWGC	3 cut(s)	334, 843, 896
Tsp45I	GTSAC	3 cut(s)	7, 766, 824
TspDTI	ATGAA	3 cut(s)	99, 135, 897
TspRI	CASTG	4 cut(s)	332, 346, 619, 675
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	400, 695
XspI	CTAG	1 cut(s)	913
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.