Rmu_sc0005705.1_g000025

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005705.1
OG0031348
Physical Location & Seq
Forward (+)
82961 .. 83431
471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgctctcctctgccgccgccccatcccccactctcactcctcctctcactctctctttgcttcaagaaccgctctttcctcactcgcttctcaaccatgactctaccaagccacacgtccatctcgacagtcttagggttttggaatgggataagctctgcgattccatcgccaccttcgctcgtactccattaggccgcgaagccactaagacctatgaagaaagcttgaggcttctggacgaaaccaatgcggcgattgagatgctaaagcacggcgcttgccaactatctccagccaccgtttgcaaccggaaagaagggaaagaggacatgggtgcccagatcattttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

118

Amino Acids

12.99

Weight (kDa)

5.66

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031348)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005705.1_g000025
rosa_samantha Rh6CG405100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 15, 18, 71, 199, 254
AfaI GTAC 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 1 cut(s) 65
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 2 cut(s) 157, 228
AluI AGCT 2 cut(s) 157, 228
AoxI GGCC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 338
BccI CCATC 3 cut(s) 31, 129, 176
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 4 cut(s) 233, 247, 267, 281
BfaI CTAG 1 cut(s) 355
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 4 cut(s) 15, 18, 199, 255
BlsI GCNGC 4 cut(s) 16, 19, 200, 256
BmgBI CACGTC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 340
BmsI GCATC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
BseGI GGATG 1 cut(s) 23
BseRI GAGGAG 2 cut(s) 30, 33
BseSI GKGCMC 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 5 cut(s) 15, 18, 71, 199, 254
BspANI GGCC 1 cut(s) 198
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 73
BssMI GATC 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 131, 304
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 134, 210
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 1 cut(s) 348
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 186
CviAII CATG 2 cut(s) 98, 334
CviJI RGCY 7 cut(s) 112, 157, 198, 206, 228, 235, 299
CviKI_1 RGCY 7 cut(s) 112, 157, 198, 206, 228, 235, 299
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 134, 210
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
FaeI CATG 2 cut(s) 101, 337
FaiI YATR 3 cut(s) 99, 219, 335
FatI CATG 2 cut(s) 97, 333
Fnu4HI GCNGC 4 cut(s) 15, 18, 199, 255
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 4 cut(s) 15, 18, 199, 255
FspBI CTAG 1 cut(s) 355
GlaI GCGC 1 cut(s) 280
GluI GCNGC 4 cut(s) 15, 18, 199, 255
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 101, 337
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 101, 164
HpaII CCGG 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 65, 125, 239
HpyAV CCTTC 2 cut(s) 187, 314
HpyCH4III ACNGT 2 cut(s) 131, 304
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 134, 210
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 2 cut(s) 101, 337
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 345
LpnPI CCDG 3 cut(s) 224, 309, 326
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 355
MaeII ACGT 1 cut(s) 117
MalI GATC 1 cut(s) 347
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 343
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 6 cut(s) 19, 51, 54, 90, 225, 322
MspI CCGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 345
NlaIII CATG 2 cut(s) 101, 337
NlaIV GGNNCC 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 4 cut(s) 16, 19, 200, 256
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 340
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SatI GCNGC 4 cut(s) 15, 18, 199, 255
Sau3AI GATC 1 cut(s) 345
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 343
SetI ASST 5 cut(s) 120, 159, 179, 218, 230
SfaNI GCATC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SsiI CCGC 5 cut(s) 15, 18, 71, 199, 254
SspMI CTAG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 131, 304
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 126
TauI GCSGC 4 cut(s) 17, 20, 201, 257
TfiI GAWTC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 234
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.