Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005719.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9153 .. 11577

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgatggtggagagggtgggaagcggaataggtggtggaggtgaaacatatgaatatgaacaatcttttgtggatggagaattccaatttacttatgaaggtaattttgatcataccacccaaaatgaagaccacgaagtgagaacagctggtcatggtactcaagagaagacccgatataggaggaggactagaggtgcaactgattatcaaagtaccccatctgatgtttcttcaattgccttaagttttgactctatcagtttaggcatagagcacagtagaatctcaaatgaatctcatgaaggcaacaatcaatttggtatttccagggactctatgcacaagaggcgcgccactggtggcaagaagaaagcttggaggaagaagcgaaagtatgagcttggtcgtcagccggcaaataccaagatctcaagcaacaaaactgtaaggagaattcgtgttagaggtggcaatgtgaagtggagggccctgagattggatactgggaacttttcttggggtagtgaggctgttactcgcaagactcgtgttcttgacgtcgtttacaatgcctcaaacaatgaacttgttaggacacaggctcttgtgaagagtgcaattgttcaggtggatgctgctccttttaggcaatggtatctacagcactacaatgttgatatcgggaggaagaaaaagacagctgcaaaaaaggatgccaaggatgctgctaccgaggaggcagatggcaccacagaagaaaccaaaaagagcagcaatctcctgaggaagcttgagaagcgccagaaagatcgtactcttgattcccacatcgaagagcagtttagtggtggtaggttgttggcttgcatttcttcccgcccaggccaatgtggaagatctgatgggtacattttggaggggaaagaattagagttttacatgaagaaactccagaggaagaagggaaaggcagctggtgctgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

330

Amino Acids

37.21

Weight (kDa)

9.85

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	111 - 306	5.4e-52	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	749
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	24, 880
AcsI	RAATTY	2 cut(s)	80, 456
AcyI	GRCGYC	1 cut(s)	561
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	4 cut(s)	160, 217, 817, 911
AfiI	CCNNNNNNNGG	2 cut(s)	180, 499
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	329, 883
AluBI	AGCT	6 cut(s)	149, 377, 403, 704, 793, 977
AluI	AGCT	6 cut(s)	149, 377, 403, 704, 793, 977
Alw21I	GWGCWC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	489, 886
ApaI	GGGCCC	1 cut(s)	493
ApeKI	GCWGC	7 cut(s)	638, 704, 728, 774, 974, 983, 986
ApoI	RAATTY	2 cut(s)	80, 456
AscI	GGCGCGCC	1 cut(s)	352
AspLEI	GCGC	3 cut(s)	354, 356, 804
AspS9I	GGNCC	2 cut(s)	489, 490
AsuHPI	GGTGA	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	493
BauI	CACGAG	1 cut(s)	549
BbsI	GAAGAC	2 cut(s)	135, 176
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	7 cut(s)	625, 691, 715, 786, 970, 973, 986
BccI	CCATC	4 cut(s)	68, 229, 740, 899
BciT130I	CCWGG	2 cut(s)	331, 885
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	109
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	662
BfoI	RGCGCY	1 cut(s)	805
BfrI	CTTAAG	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	496
BglII	AGATCT	2 cut(s)	429, 899
BisI	GCNGC	7 cut(s)	639, 705, 729, 775, 975, 984, 987
BlsI	GCNGC	7 cut(s)	640, 706, 730, 776, 976, 985, 988
Bme1390I	CCNGG	2 cut(s)	331, 885
BmgT120I	GGNCC	2 cut(s)	489, 490
BmiI	GGNNCC	2 cut(s)	491, 751
BmrFI	CCNGG	2 cut(s)	331, 885
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	625, 706, 715
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	135, 176
BpmI	CTGGAG	1 cut(s)	938
BpuEI	CTTGAG	3 cut(s)	147, 418, 815
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	4 cut(s)	330, 720, 735, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 499
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	364, 511
Bse21I	CCTNAGG	1 cut(s)	785
Bse3DI	GCAATG	2 cut(s)	481, 659
BseBI	CCWGG	2 cut(s)	331, 885
BseDI	CCNNGG	4 cut(s)	330, 720, 735, 883
BseGI	GGATG	4 cut(s)	79, 640, 721, 730
BseLI	CCNNNNNNNGG	2 cut(s)	180, 499
BseMI	GCAATG	2 cut(s)	481, 659
BseMII	CTCAG	2 cut(s)	485, 776
BseNI	ACTGG	2 cut(s)	364, 511
BsePI	GCGCGC	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	199, 752
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	7 cut(s)	625, 691, 715, 786, 970, 973, 986
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	491, 888
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	180, 499
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	491, 888
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	279, 493
Bsp143I	GATC	4 cut(s)	109, 429, 811, 899
BspACI	CCGC	2 cut(s)	24, 880
BspANI	GGCC	2 cut(s)	491, 888
BspCNI	CTCAG	2 cut(s)	486, 777
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	491, 751
BspQI	GCTCTTC	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	749
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	481, 659
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	364, 511
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	330, 720, 735, 883
BssHII	GCGCGC	1 cut(s)	352
BssMI	GATC	4 cut(s)	109, 429, 811, 899
BssNI	GRCGYC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	331, 885
Bst4CI	ACNGT	2 cut(s)	281, 448
Bst6I	CTCTTC	2 cut(s)	608, 831
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstC8I	GCNNGC	3 cut(s)	354, 417, 868
BstDEI	CTNAG	2 cut(s)	494, 785
BstF5I	GGATG	4 cut(s)	79, 640, 721, 730
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	3 cut(s)	354, 356, 804
BstKTI	GATC	4 cut(s)	112, 432, 814, 902
BstMBI	GATC	4 cut(s)	109, 429, 811, 899
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 725, 799, 980, 983
BstNI	CCWGG	2 cut(s)	331, 885
BstSCI	CCNGG	2 cut(s)	329, 883
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	7 cut(s)	625, 691, 715, 786, 970, 973, 986
BstV2I	GAAGAC	2 cut(s)	135, 176
BstX2I	RGATCY	2 cut(s)	429, 899
BstYI	RGATCY	2 cut(s)	429, 899
Bsu36I	CCTNAGG	1 cut(s)	785
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	491, 888
BtsCI	GGATG	4 cut(s)	79, 640, 721, 730
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	354, 417, 868
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	3 cut(s)	354, 356, 804
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	489, 490
Csp6I	GTAC	4 cut(s)	159, 216, 816, 910
CviAII	CATG	3 cut(s)	155, 302, 943
CviQI	GTAC	4 cut(s)	159, 216, 816, 910
DdeI	CTNAG	2 cut(s)	494, 785
DpnI	GATC	4 cut(s)	111, 431, 813, 901
DpnII	GATC	4 cut(s)	109, 429, 811, 899
DraIII	CACNNNGTG	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	608, 831
EarI	CTCTTC	2 cut(s)	608, 831
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	682
Eco81I	CCTNAGG	1 cut(s)	785
EcoO109I	RGGNCCY	2 cut(s)	489, 490
EcoRI	GAATTC	2 cut(s)	80, 456
EcoRII	CCWGG	2 cut(s)	329, 883
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	3 cut(s)	158, 305, 946
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	154, 301, 942
FauI	CCCGC	1 cut(s)	887
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	7 cut(s)	639, 705, 729, 775, 975, 984, 987
FokI	GGATG	4 cut(s)	86, 647, 728, 737
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	7 cut(s)	639, 705, 729, 775, 975, 984, 987
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	3 cut(s)	353, 355, 803
GluI	GCNGC	7 cut(s)	639, 705, 729, 775, 975, 984, 987
GsuI	CTGGAG	1 cut(s)	938
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	2 cut(s)	491, 888
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	3 cut(s)	354, 356, 804
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	158, 305, 946
Hin6I	GCGC	3 cut(s)	352, 354, 802
HinP1I	GCGC	3 cut(s)	352, 354, 802
HindIII	AAGCTT	2 cut(s)	375, 791
HinfI	GANTC	6 cut(s)	254, 285, 296, 335, 547, 824
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	2 cut(s)	226, 904
Hpy188III	TCNNGA	7 cut(s)	164, 302, 557, 685, 784, 821, 955
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	3 cut(s)	92, 299, 958
HpyCH4III	ACNGT	2 cut(s)	281, 448
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	6 cut(s)	200, 343, 620, 707, 870, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 725, 799, 980, 983
HpyF3I	CTNAG	2 cut(s)	494, 785
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	158, 305, 946
HspAI	GCGC	3 cut(s)	352, 354, 802
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 429, 811, 899
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	7 cut(s)	625, 691, 715, 786, 970, 973, 986
LweI	GCATC	3 cut(s)	625, 706, 715
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	4 cut(s)	111, 431, 813, 901
MboI	GATC	4 cut(s)	109, 429, 811, 899
MfeI	CAATTG	2 cut(s)	237, 621
MflI	RGATCY	2 cut(s)	429, 899
MhlI	GDGCHC	2 cut(s)	279, 493
MluCI	AATT	8 cut(s)	80, 86, 103, 237, 317, 456, 621, 929
MlyI	GAGTC	3 cut(s)	248, 329, 541
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	3 cut(s)	149, 704, 977
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	331, 885
MunI	CAATTG	2 cut(s)	237, 621
MvaI	CCWGG	2 cut(s)	331, 885
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	349, 725, 799, 980, 983
NaeI	GCCGGC	1 cut(s)	417
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	4 cut(s)	109, 429, 811, 899
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	158, 305, 946
NlaIV	GGNNCC	2 cut(s)	491, 751
PagI	TCATGA	1 cut(s)	301
PalAI	GGCGCGCC	1 cut(s)	352
PauI	GCGCGC	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	285, 296, 824
PkrI	GCNGC	7 cut(s)	640, 706, 730, 776, 976, 985, 988
PleI	GAGTC	3 cut(s)	248, 329, 541
PpsI	GAGTC	3 cut(s)	248, 329, 541
Psp6I	CCWGG	2 cut(s)	329, 883
PspGI	CCWGG	2 cut(s)	329, 883
PspN4I	GGNNCC	2 cut(s)	491, 751
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	489, 490
PsuI	RGATCY	2 cut(s)	429, 899
PteI	GCGCGC	1 cut(s)	352
PvuII	CAGCTG	3 cut(s)	149, 704, 977
RsaI	GTAC	4 cut(s)	160, 217, 817, 911
RsaNI	GTAC	4 cut(s)	159, 216, 816, 910
RseI	CAYNNNNRTG	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	7 cut(s)	639, 705, 729, 775, 975, 984, 987
Sau3AI	GATC	4 cut(s)	109, 429, 811, 899
Sau96I	GGNCC	2 cut(s)	489, 490
SchI	GAGTC	3 cut(s)	248, 329, 541
ScrFI	CCNGG	2 cut(s)	331, 885
SduI	GDGCHC	2 cut(s)	279, 493
SfaNI	GCATC	3 cut(s)	625, 706, 715
SfcI	CTRYAG	1 cut(s)	662
SgsI	GGCGCGCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	4 cut(s)	162, 244, 433, 794
SmoI	CTYRAG	4 cut(s)	162, 244, 433, 794
Sse9I	AATT	8 cut(s)	80, 86, 103, 237, 317, 456, 621, 929
SsiI	CCGC	2 cut(s)	24, 880
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	329, 883
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	281, 448
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	834
TasI	AATT	8 cut(s)	80, 86, 103, 237, 317, 456, 621, 929
TfiI	GAWTC	3 cut(s)	285, 296, 824
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	7 cut(s)	638, 704, 728, 774, 974, 983, 986
TspDTI	ATGAA	8 cut(s)	66, 72, 111, 141, 309, 318, 600, 959
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	80, 456
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.