Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005756.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23571 .. 24278

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaagttccctacccccaatgggacaggctgtgtgaagggaagtcaacagctggcacgaaagtgttactcaacaactgtggcgcagtcaaggcgctctcatgagatcctaacagtgggaaaccatgtacagttgataaatacttttgaagatcctagagatgacgaggaaaaatatgttaaaaaggaacctgtcaacccagaaacatccttgagggttatcagcatctccgacgagcaccctgagcggacagtccgcataggtgctcagctagccccagagatagcagcagaactcactcagtttctaagacacaacactgccgtctttgcatggtcctacgctgatatgcctggcatctcccctgaaatcatcatgcataagttaagcatcaaaccatccttctatccggtaaaacaacggcgaagcgcctttgacgaagagagatatcgtgcaatagggaaagatgtgccaagcttcagggcattgggttcatccgccaggtcaattatccccagtagatttccaacttggtcatggtcaagaaacctagcggaaagtagctcaatcgatatcatcgtggtctatgattccttgagaaatagaatatgcaaacacatcatcaaggataatagaatcttgattcaacgtctcatgtacactagtgtaattcatggacatctccctattctctggaattggttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

235

Amino Acids

26.98

Weight (kDa)

9.51

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	4 cut(s)	247, 256, 498, 554
AclWI	GGATC	2 cut(s)	100, 146
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	2 cut(s)	129, 659
AfiI	CCNNNNNNNGG	2 cut(s)	21, 115
AgsI	TTSAA	2 cut(s)	149, 647
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	352, 500
AleI	CACNNNNGTG	1 cut(s)	61
AluBI	AGCT	4 cut(s)	52, 271, 477, 564
AluI	AGCT	4 cut(s)	52, 271, 477, 564
Alw21I	GWGCWC	2 cut(s)	240, 268
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	100, 146
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	3 cut(s)	85, 96, 431
AspS9I	GGNCC	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	240, 268
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	308, 437
BciT130I	CCWGG	2 cut(s)	354, 502
BcoDI	GTCTC	1 cut(s)	656
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	4 cut(s)	156, 272, 551, 663
BfoI	RGCGCY	2 cut(s)	97, 432
BisI	GCNGC	1 cut(s)	288
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	354, 502
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	354, 502
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	3 cut(s)	234, 366, 399
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	232, 616
Bsa29I	ATCGAT	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 115
Bse1I	ACTGG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	354, 502
BseCI	ATCGAT	1 cut(s)	570
BseGI	GGATG	3 cut(s)	206, 398, 494
BseLI	CCNNNNNNNGG	2 cut(s)	21, 115
BseMII	CTCAG	3 cut(s)	234, 281, 314
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	570
BsiHKAI	GWGCWC	2 cut(s)	240, 268
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	21, 115
BsmAI	GTCTC	1 cut(s)	656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	240, 268
Bsp1407I	TGTACA	2 cut(s)	127, 657
Bsp143I	GATC	2 cut(s)	105, 151
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	4 cut(s)	247, 256, 498, 554
BspCNI	CTCAG	3 cut(s)	235, 280, 313
BspDI	ATCGAT	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	189
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	100, 146
BsrBI	CCGCTC	1 cut(s)	247
BsrGI	TGTACA	2 cut(s)	127, 657
BsrI	ACTGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	105, 151
Bst2UI	CCWGG	2 cut(s)	354, 502
Bst4CI	ACNGT	4 cut(s)	79, 115, 132, 253
Bst6I	CTCTTC	1 cut(s)	435
BstAUI	TGTACA	2 cut(s)	127, 657
BstC8I	GCNNGC	2 cut(s)	54, 273
BstDEI	CTNAG	4 cut(s)	243, 267, 300, 308
BstF5I	GGATG	3 cut(s)	206, 398, 494
BstH2I	RGCGCY	2 cut(s)	97, 432
BstHHI	GCGC	3 cut(s)	85, 96, 431
BstKTI	GATC	2 cut(s)	108, 154
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	2 cut(s)	105, 151
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 244, 272, 329
BstNI	CCWGG	2 cut(s)	354, 502
BstSCI	CCNGG	2 cut(s)	352, 500
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	105, 151
BstYI	RGATCY	2 cut(s)	105, 151
Bsu15I	ATCGAT	1 cut(s)	570
BsuTUI	ATCGAT	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	206, 398, 494
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	120, 318
Cac8I	GCNNGC	2 cut(s)	54, 273
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	3 cut(s)	85, 96, 431
Cfr13I	GGNCC	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	128, 658
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	7 cut(s)	101, 125, 333, 376, 537, 655, 674
CviJI	RGCY	6 cut(s)	30, 52, 271, 275, 477, 564
CviKI_1	RGCY	6 cut(s)	30, 52, 271, 275, 477, 564
CviQI	GTAC	2 cut(s)	128, 658
DdeI	CTNAG	4 cut(s)	243, 267, 300, 308
DpnI	GATC	2 cut(s)	107, 153
DpnII	GATC	2 cut(s)	105, 151
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	487
Eco32I	GATATC	2 cut(s)	449, 574
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	352, 500
EcoRV	GATATC	2 cut(s)	449, 574
EcoT22I	ATGCAT	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	7 cut(s)	104, 128, 336, 379, 540, 658, 677
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	7 cut(s)	100, 124, 332, 375, 536, 654, 673
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	193, 385, 481
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	4 cut(s)	156, 272, 551, 663
GlaI	GCGC	3 cut(s)	84, 95, 430
GluI	GCNGC	1 cut(s)	288
HaeII	RGCGCY	2 cut(s)	97, 432
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	3 cut(s)	85, 96, 431
Hin1II	CATG	7 cut(s)	104, 128, 336, 379, 540, 658, 677
Hin6I	GCGC	3 cut(s)	83, 94, 429
HinP1I	GCGC	3 cut(s)	83, 94, 429
HincII	GTYRAC	2 cut(s)	47, 196
HindII	GTYRAC	2 cut(s)	47, 196
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	590, 636, 643
HpaII	CCGG	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	47, 196, 660
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	101, 543, 640, 694
Hpy8I	GTNNAC	3 cut(s)	47, 196, 660
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	31, 412
HpyCH4III	ACNGT	4 cut(s)	79, 115, 132, 253
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	4 cut(s)	332, 379, 455, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 244, 272, 329
HpyF3I	CTNAG	4 cut(s)	243, 267, 300, 308
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	7 cut(s)	104, 128, 336, 379, 540, 658, 677
HspAI	GCGC	3 cut(s)	83, 94, 429
Kzo9I	GATC	2 cut(s)	105, 151
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	3 cut(s)	234, 366, 399
MaeI	CTAG	4 cut(s)	156, 272, 551, 663
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	107, 153
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	2 cut(s)	105, 151
MboII	GAAGA	2 cut(s)	161, 452
MflI	RGATCY	2 cut(s)	105, 151
MhlI	GDGCHC	2 cut(s)	240, 268
MluCI	AATT	3 cut(s)	507, 669, 697
MmeI	TCCRAC	2 cut(s)	255, 551
MnlI	CCTC	2 cut(s)	160, 207
Mph1103I	ATGCAT	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	2 cut(s)	180, 386
MslI	CAYNNNNRTG	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	354, 502
MvaI	CCWGG	2 cut(s)	354, 502
MwoI	GCNNNNNNNGC	4 cut(s)	91, 244, 272, 329
NdeII	GATC	2 cut(s)	105, 151
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	7 cut(s)	104, 128, 336, 379, 540, 658, 677
NlaIV	GGNNCC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	381
OliI	CACNNNNGTG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	590, 636, 643
PkrI	GCNGC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	352, 500
PspGI	CCWGG	2 cut(s)	352, 500
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	105, 151
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	129, 659
RsaNI	GTAC	2 cut(s)	128, 658
RseI	CAYNNNNRTG	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	180, 386
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	105, 151
Sau96I	GGNCC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	354, 502
SduI	GDGCHC	2 cut(s)	240, 268
SetI	ASST	9 cut(s)	54, 193, 265, 273, 479, 506, 552, 566, 652
SfaNI	GCATC	3 cut(s)	234, 366, 399
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	211, 595
SmoI	CTYRAG	2 cut(s)	211, 595
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	3 cut(s)	507, 669, 697
SsiI	CCGC	4 cut(s)	247, 256, 498, 554
SspMI	CTAG	4 cut(s)	156, 272, 551, 663
StyD4I	CCNGG	2 cut(s)	352, 500
TaaI	ACNGT	4 cut(s)	79, 115, 132, 253
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	570
TasI	AATT	3 cut(s)	507, 669, 697
TatI	WGTACW	2 cut(s)	127, 657
TfiI	GAWTC	3 cut(s)	590, 636, 643
Tru1I	TTAA	2 cut(s)	180, 386
Tru9I	TTAA	2 cut(s)	180, 386
TscAI	CASTG	2 cut(s)	120, 325
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	17, 483, 662
TspRI	CASTG	2 cut(s)	120, 325
VpaK11BI	GGWCC	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	4 cut(s)	156, 272, 551, 663
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.