Rmu_sc0005786.1_g000003

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005786.1
N/A
Physical Location & Seq
Forward (+)
17578 .. 18486
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
atgctcaatacagatcagcacaatgttcaggtgaagaagaagatgacagaggaggatttcattcggaataatagacacatcaatggaggcagtgatctacctcgagatttcctgacagagctttatcactcaatatgcaagaatgagattcgcactactacagaacaagaacatgaagaggtttatcaaacatgcattaatggatttttagctattgcaaagatttcagcatgccaccatcttgaagatgtactagatgatttggttgtgtctcgctgtaagttcacaactttgttaaacccatcatcagttgaggaacatgtgctagcctttggtgacgacacaaaagctaggatgtcaactgtgacagttttcaccattgccaataggatttccggcgagctactgttcgccttcgaatttctcctctaccagttgattcaagctgcaataagcatacccacaagatcagtgttcttccaacaacaagattcaccaaggtttccggccaaaaaatcaccggaaaccaaaaacccaaccaagaaatcgaaaattttctgtttttctctcctcttcgatttgcttcaatccaagcctaatcacctaaaatccttacctgagatggaggaggaggaagagaggaagcttcgatggccggcgacgagtccaattggggtccggctgaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

229

Amino Acids

26.39

Weight (kDa)

6.46

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 1 - 50 1.7e-17 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 507, 653
AcsI RAATTY 2 cut(s) 419, 552
AfaI GTAC 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 245, 443, 587
AluBI AGCT 6 cut(s) 121, 212, 350, 403, 446, 646
AluI AGCT 6 cut(s) 121, 212, 350, 403, 446, 646
Alw26I GTCTC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 507, 653
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 419, 552
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 676
AsuHPI GGTGA 6 cut(s) 43, 347, 367, 486, 510, 593
AsuII TTCGAA 1 cut(s) 417
AsuNHI GCTAGC 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 676
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 246, 310, 616, 645
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 3 cut(s) 254, 326, 351
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 676
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 676
BmiI GGNNCC 1 cut(s) 677
BmtI GCTAGC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 683
Bpu14I TTCGAA 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 497
BsaWI WCCGGW 1 cut(s) 520
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 609, 674
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 5 cut(s) 65, 416, 560, 641, 644
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 2 cut(s) 509, 655
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 5 cut(s) 396, 506, 521, 656, 679
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 2 cut(s) 509, 655
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 13, 94, 467
BspANI GGCC 2 cut(s) 509, 655
BspCNI CTCAG 2 cut(s) 610, 675
BspLI GGNNCC 1 cut(s) 677
BspOI GCTAGC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 3 cut(s) 13, 94, 467
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 3 cut(s) 364, 370, 408
Bst6I CTCTTC 3 cut(s) 171, 578, 630
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 232, 327, 401, 657
BstDEI CTNAG 2 cut(s) 618, 683
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 3 cut(s) 16, 97, 470
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 3 cut(s) 13, 94, 467
BstMWI GCNNNNNNNGC 1 cut(s) 652
BstNSI RCATGY 3 cut(s) 195, 234, 323
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 509, 655
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 97, 477
Cac8I GCNNGC 4 cut(s) 232, 327, 401, 657
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 676
Csp6I GTAC 1 cut(s) 251
CviAII CATG 4 cut(s) 173, 192, 231, 320
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 618, 683
DpnI GATC 3 cut(s) 15, 96, 469
DpnII GATC 3 cut(s) 13, 94, 467
EaeI YGGCCR 2 cut(s) 507, 653
Eam1104I CTCTTC 3 cut(s) 171, 578, 630
EarI CTCTTC 3 cut(s) 171, 578, 630
Eco130I CCWWGG 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 676
Eco88I CYCGRG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 4 cut(s) 176, 195, 234, 323
FaiI YATR 6 cut(s) 136, 174, 193, 232, 321, 458
FatI CATG 4 cut(s) 172, 191, 230, 319
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 3 cut(s) 254, 326, 351
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 509, 655
HapII CCGG 5 cut(s) 396, 506, 521, 656, 679
Hin1II CATG 4 cut(s) 176, 195, 234, 323
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 148, 439, 491, 664
HpaII CCGG 5 cut(s) 396, 506, 521, 656, 679
HphI GGTGA 6 cut(s) 43, 347, 367, 486, 510, 593
Hpy166II GTNNAC 2 cut(s) 285, 360
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 104, 112, 242
Hpy8I GTNNAC 2 cut(s) 285, 360
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 364, 370, 408
HpyCH4V TGCA 4 cut(s) 138, 195, 218, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 652
HpyF3I CTNAG 2 cut(s) 618, 683
Hsp92II CATG 4 cut(s) 176, 195, 234, 323
KroI GCCGGC 1 cut(s) 655
KroNI GCCGGC 1 cut(s) 657
Kzo9I GATC 3 cut(s) 13, 94, 467
LpnPI CCDG 8 cut(s) 14, 125, 409, 446, 519, 534, 630, 669
Lsp1109I GCAGC 1 cut(s) 433
MaeI CTAG 3 cut(s) 254, 326, 351
MaeIII GTNAC 2 cut(s) 335, 364
MalI GATC 3 cut(s) 15, 96, 469
MboI GATC 3 cut(s) 13, 94, 467
MboII GAAGA 8 cut(s) 46, 49, 52, 188, 257, 469, 565, 647
MfeI CAATTG 1 cut(s) 669
MluCI AATT 3 cut(s) 419, 552, 669
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 505
Mph1103I ATGCAT 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 2 cut(s) 198, 296
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 5 cut(s) 396, 506, 521, 656, 679
MunI CAATTG 1 cut(s) 669
MwoI GCNNNNNNNGC 1 cut(s) 652
NaeI GCCGGC 1 cut(s) 657
NdeII GATC 3 cut(s) 13, 94, 467
NgoMIV GCCGGC 1 cut(s) 655
NheI GCTAGC 1 cut(s) 325
NlaIII CATG 4 cut(s) 176, 195, 234, 323
NlaIV GGNNCC 1 cut(s) 677
NmuCI GTSAC 2 cut(s) 335, 364
NsiI ATGCAT 1 cut(s) 197
NspI RCATGY 3 cut(s) 195, 234, 323
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 102
PciI ACATGT 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 148, 439, 491
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 672
PscI ACATGT 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 677
PspPI GGNCC 1 cut(s) 676
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 198, 296
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 3 cut(s) 13, 94, 467
Sau96I GGNCC 1 cut(s) 676
SchI GAGTC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 1 cut(s) 676
SlaI CTCGAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
SphI GCATGC 1 cut(s) 234
Sse9I AATT 3 cut(s) 419, 552, 669
SspMI CTAG 3 cut(s) 254, 326, 351
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 364, 370, 408
TaqI TCGA 5 cut(s) 103, 417, 548, 576, 649
TasI AATT 3 cut(s) 419, 552, 669
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 3 cut(s) 148, 439, 491
Tru1I TTAA 2 cut(s) 198, 296
Tru9I TTAA 2 cut(s) 198, 296
TscAI CASTG 2 cut(s) 97, 477
TseFI GTSAC 2 cut(s) 335, 364
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 335, 364
TspDTI ATGAA 2 cut(s) 49, 189
TspRI CASTG 2 cut(s) 97, 477
VpaK11BI GGWCC 1 cut(s) 676
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 2 cut(s) 419, 552
XceI RCATGY 3 cut(s) 195, 234, 323
XhoI CTCGAG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 3 cut(s) 254, 326, 351
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.