Rmu_sc0005787.1_g000001

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005787.1
N/A
Physical Location & Seq
Reverse (-)
559 .. 3937
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
atggctctttgtttctttggcaccggccgacagagcaacgtcttcgacccattttccctcgacatctgggagcccttcataggctctctcatcaactcctcctccacttccggcgacacctttgccttggcccataccagaattaactggaaggagaccccggatgcccatatcttcaaggcggacttccccgaactgaagaaggaagaagtgaaggttgagttggagatgaattctggaatcgactggaaggagaccccggatgcccatatcttcaaggcggacctccccgaactgaagaaggaagaagtgaaggttgagctagagatgaattctggagctgaggttgtggaggtgggagaggcagaagtcgcggctgttctgaaaaatgaagacggaggagatggtggtgacgaagtcattgacgaaagagaattgaatgggaagtttggttggctgcggaacttccctctttccatcttacaaacgagacagtctctggtaagcgcaactctgctagcggaacttctctatttccatcttgcaaacgagataatcgccactaagcgcaactccgctagcggaacttctccctcaaaacctgggaaaaccatcgcagctgacagcaacgccatgcaccaggctgccgccaggcaggtcctcgcgacatttccggccacttatcatcagcggagggaattccgccaacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

237

Amino Acids

26.34

Weight (kDa)

5.08

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 2 cut(s) 374, 665
AcoI YGGCCR 2 cut(s) 25, 675
AcsI RAATTY 3 cut(s) 232, 331, 698
AcuI CTGAAG 2 cut(s) 218, 317
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 178, 277, 439
AjnI CCWGG 3 cut(s) 601, 639, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 322, 341, 620
AluI AGCT 3 cut(s) 322, 341, 620
Alw26I GTCTC 4 cut(s) 149, 248, 484, 501
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 3 cut(s) 25, 129, 675
ApeKI GCWGC 3 cut(s) 457, 617, 644
ApoI RAATTY 3 cut(s) 232, 331, 698
AspLEI GCGC 2 cut(s) 509, 570
AspS9I GGNCC 3 cut(s) 130, 283, 658
AsuC2I CCSGG 2 cut(s) 161, 260
AsuHPI GGTGA 1 cut(s) 422
AsuNHI GCTAGC 2 cut(s) 517, 578
AvaII GGWCC 2 cut(s) 283, 658
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 34, 399
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 3 cut(s) 444, 629, 631
BccI CCATC 4 cut(s) 398, 485, 546, 620
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 104, 138
BciT130I CCWGG 3 cut(s) 603, 641, 652
BcnI CCSGG 2 cut(s) 161, 260
BcoDI GTCTC 4 cut(s) 149, 248, 484, 501
BfaI CTAG 3 cut(s) 323, 518, 579
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 5 cut(s) 375, 458, 618, 645, 648
BlsI GCNGC 5 cut(s) 376, 459, 619, 646, 649
Bme1390I CCNGG 5 cut(s) 161, 260, 603, 641, 652
Bme18I GGWCC 2 cut(s) 283, 658
BmgT120I GGNCC 3 cut(s) 130, 283, 658
BmiI GGNNCC 2 cut(s) 22, 72
BmrFI CCNGG 5 cut(s) 161, 260, 603, 641, 652
BmsI GCATC 2 cut(s) 154, 253
BmtI GCTAGC 2 cut(s) 521, 582
BpiI GAAGAC 2 cut(s) 34, 399
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 161, 260
BsaI GGTCTC 2 cut(s) 149, 248
BsaJI CCNNGG 4 cut(s) 126, 159, 258, 602
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 152, 251
BseBI CCWGG 3 cut(s) 603, 641, 652
BseDI CCNNGG 4 cut(s) 126, 159, 258, 602
BseGI GGATG 2 cut(s) 169, 268
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 152, 251
BseRI GAGGAG 3 cut(s) 88, 91, 414
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 3 cut(s) 444, 629, 631
Bsh1236I CGCG 2 cut(s) 374, 665
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 3 cut(s) 27, 131, 677
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 5 cut(s) 24, 111, 161, 260, 674
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 4 cut(s) 149, 248, 484, 501
BsnI GGCC 3 cut(s) 27, 131, 677
Bso31I GGTCTC 2 cut(s) 149, 248
Bsp1286I GDGCHC 1 cut(s) 75
Bsp68I TCGCGA 1 cut(s) 665
BspANI GGCC 3 cut(s) 27, 131, 677
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 2 cut(s) 374, 665
BspLI GGNNCC 2 cut(s) 22, 72
BspMI ACCTGC 1 cut(s) 646
BspOI GCTAGC 2 cut(s) 521, 582
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 2 cut(s) 149, 248
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 2 cut(s) 152, 251
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 4 cut(s) 126, 159, 258, 602
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 603, 641, 652
Bst4CI ACNGT 2 cut(s) 495, 711
BstC8I GCNNGC 2 cut(s) 519, 580
BstDEI CTNAG 2 cut(s) 342, 564
BstF5I GGATG 2 cut(s) 169, 268
BstFNI CGCG 2 cut(s) 374, 665
BstHHI GCGC 2 cut(s) 509, 570
BstMAI GTCTC 4 cut(s) 149, 248, 484, 501
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 33, 371
BstNI CCWGG 3 cut(s) 603, 641, 652
BstSCI CCNGG 5 cut(s) 159, 258, 601, 639, 650
BstUI CGCG 2 cut(s) 374, 665
BstV1I GCAGC 3 cut(s) 444, 629, 631
BstV2I GAAGAC 2 cut(s) 34, 399
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 3 cut(s) 27, 131, 677
BtgZI GCGATG 1 cut(s) 598
BtsCI GGATG 2 cut(s) 169, 268
BtuMI TCGCGA 1 cut(s) 665
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 2 cut(s) 519, 580
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 2 cut(s) 509, 570
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 130, 283, 658
CviAII CATG 1 cut(s) 634
DdeI CTNAG 2 cut(s) 342, 564
EaeI YGGCCR 2 cut(s) 25, 675
EagI CGGCCG 1 cut(s) 25
EciI GGCGGA 3 cut(s) 197, 296, 692
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 2 cut(s) 149, 248
Eco47I GGWCC 2 cut(s) 283, 658
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 218, 317
EcoO109I RGGNCCY 1 cut(s) 658
EcoRI GAATTC 3 cut(s) 232, 331, 698
EcoRII CCWGG 3 cut(s) 601, 639, 650
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 637
FaiI YATR 5 cut(s) 80, 135, 171, 270, 635
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 375, 458, 618, 645, 648
FokI GGATG 2 cut(s) 176, 275
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 5 cut(s) 375, 458, 618, 645, 648
FspBI CTAG 3 cut(s) 323, 518, 579
GlaI GCGC 2 cut(s) 508, 569
GluI GCNGC 5 cut(s) 375, 458, 618, 645, 648
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 3 cut(s) 27, 131, 677
HapII CCGG 5 cut(s) 24, 111, 161, 260, 674
HhaI GCGC 2 cut(s) 509, 570
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 2 cut(s) 507, 568
HinP1I GCGC 2 cut(s) 507, 568
HinfI GANTC 1 cut(s) 240
HpaII CCGG 5 cut(s) 24, 111, 161, 260, 674
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 3 cut(s) 237, 336, 664
HpyAV CCTTC 7 cut(s) 85, 145, 196, 208, 244, 295, 307
HpyCH4III ACNGT 2 cut(s) 495, 711
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 545, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 371
HpyF3I CTNAG 2 cut(s) 342, 564
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 2 cut(s) 507, 568
LmnI GCTCC 2 cut(s) 70, 338
Lsp1109I GCAGC 3 cut(s) 444, 629, 631
LweI GCATC 2 cut(s) 154, 253
MaeI CTAG 3 cut(s) 323, 518, 579
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 8 cut(s) 34, 166, 211, 218, 265, 310, 317, 404
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 5 cut(s) 141, 232, 331, 434, 698
MmeI TCCRAC 1 cut(s) 204
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 620, 691
MspI CCGG 5 cut(s) 24, 111, 161, 260, 674
MspR9I CCNGG 5 cut(s) 161, 260, 603, 641, 652
MvaI CCWGG 3 cut(s) 603, 641, 652
MvnI CGCG 2 cut(s) 374, 665
MwoI GCNNNNNNNGC 2 cut(s) 33, 371
NciI CCSGG 2 cut(s) 161, 260
NheI GCTAGC 2 cut(s) 517, 578
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 2 cut(s) 22, 72
NmuCI GTSAC 1 cut(s) 410
NruI TCGCGA 1 cut(s) 665
PfeI GAWTC 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 5 cut(s) 376, 459, 619, 646, 649
PpuMI RGGWCCY 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 3 cut(s) 601, 639, 650
PspGI CCWGG 3 cut(s) 601, 639, 650
PspN4I GGNNCC 2 cut(s) 22, 72
PspPI GGNCC 3 cut(s) 130, 283, 658
PspPPI RGGWCCY 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 620
RruI TCGCGA 1 cut(s) 665
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 5 cut(s) 375, 458, 618, 645, 648
Sau96I GGNCC 3 cut(s) 130, 283, 658
ScrFI CCNGG 5 cut(s) 161, 260, 603, 641, 652
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 154, 253
SinI GGWCC 2 cut(s) 283, 658
Sse9I AATT 5 cut(s) 141, 232, 331, 434, 698
SspMI CTAG 3 cut(s) 323, 518, 579
StyD4I CCNGG 5 cut(s) 159, 258, 601, 639, 650
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 495, 711
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 45, 60, 243
TasI AATT 5 cut(s) 141, 232, 331, 434, 698
TauI GCSGC 2 cut(s) 377, 650
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 3 cut(s) 457, 617, 644
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 67, 245, 344, 405
TspGWI ACGGA 1 cut(s) 411
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 283, 658
XapI RAATTY 3 cut(s) 232, 331, 698
XspI CTAG 3 cut(s) 323, 518, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.