Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005803.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

40993 .. 45765

Gene Structure 4773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

atgtcgtcgaagactcttccttactccaacaaagatatccactacgacaacgccaagttccgccaacgctccgtcttcaaggtgataaatcagaccttactcaccagtaacgtaaagcatcattgtacgagttgtagtacaggaaagtttctagtgttgctaatgatattcggtatagcgtttcttctgctgacacatacaagttcccccggttctgtttcgaacggtttagggaatggtagtgggaatgcccttagcaagcagggagttgatgcaactgttgtggatgcccttgatactgccatgataatgggggttgatgaagttgtttctgaagcaggcttatggattgagaagcacctttcgaataggattactccggatggtcttagcagtacttcagaagtttctaccttacagcttgagttcatctatctcagttccgtttctggtgatccaaaatacaccatggcagctatgaaggtcttagaacacatgaagactctaccaaaggtggaaggactggttcctatatttataaaccctaacactggtgaatttagtggagaaaatataagactgggatctcgtggcgacagctactatgaatacctactgaaagtttggcttcagaagggaccaaatcgagaaagtaatttgacatatctctatgatatgtatgaggaagcaatgaaaggtgttaggcatcgtcttgttaggaaatcaataccaaatggattggtttttgtaggggaattgccttctggatctgatggtgattttagcccaaaaatggatcatctggtatgtttcttggctggtactcttgcacttggtgccaccaaaggcattaccaaggaaaaagcaatgagagataatttgctaaattttgaagatcttgaaaatttgaaacttgcagaagatctggctaaaacatgctttgagatgtattcagtaacatctactggtcttgctccagaaattgcttactttcatacagaggaattttctgatggaggtcttgatggcggtaacaagagttcaaaatatttgaatgacataatcatcaaacgtgcggatcgacataatctcttgcgtccggaaactgttgaatcattgtttgtcttgtaccgtattacagaagatccaaaatatcgtgaatggggttggcagatttttgaagcatttgagaaatatacaaggattgatactggtggatacagttctttggatgatgtaactaaaattcctcctcatacaagagacaagatggagacgttttttttgggagagactctaaagtatctgtacttgctgtttggagatacttctcttgttcctttggataaatatgtttttaacactgaagctcatcctattccaattgaaggaactaccaagagggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

469

Amino Acids

52.43

Weight (kDa)

5.8

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	130 - 462	5.4e-113	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	836
AccIII	TCCGGA	2 cut(s)	379, 1099
AciI	CCGC	3 cut(s)	61, 1029, 1076
AclWI	GGATC	6 cut(s)	449, 592, 775, 804, 1086, 1139
AcsI	RAATTY	5 cut(s)	557, 886, 904, 1004, 1245
AcuI	CTGAAG	4 cut(s)	354, 384, 614, 1386
AdeI	CACNNNGTG	1 cut(s)	836
AfaI	GTAC	6 cut(s)	127, 139, 397, 823, 1130, 1310
AfiI	CCNNNNNNNGG	3 cut(s)	551, 793, 1388
AgsI	TTSAA	9 cut(s)	79, 893, 902, 910, 1044, 1054, 1112, 1181, 1388
AluBI	AGCT	4 cut(s)	421, 476, 600, 1370
AluI	AGCT	4 cut(s)	421, 476, 600, 1370
Alw26I	GTCTC	3 cut(s)	1257, 1268, 1286
AlwI	GGATC	6 cut(s)	449, 592, 775, 804, 1086, 1139
Aor13HI	TCCGGA	2 cut(s)	379, 1099
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	5 cut(s)	557, 886, 904, 1004, 1245
ArsI	GACNNNNNNTTYG	2 cut(s)	1267, 1299
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	5 cut(s)	94, 94, 464, 566, 788
AsuII	TTCGAA	2 cut(s)	221, 365
AvaII	GGWCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	836
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	3 cut(s)	17, 67, 506
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	5 cut(s)	377, 767, 1007, 1019, 1264
BciVI	GTATCC	1 cut(s)	1211
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	1257, 1268, 1286
BfaI	CTAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	1211
BglII	AGATCT	2 cut(s)	895, 922
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	3 cut(s)	528, 639, 838
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	4 cut(s)	127, 262, 277, 715
BmuI	ACTGGG	1 cut(s)	590
BpiI	GAAGAC	3 cut(s)	17, 67, 506
BpmI	CTGGAG	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	2 cut(s)	221, 365
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	208, 468, 855
BsaWI	WCCGGW	2 cut(s)	379, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	551, 793, 1388
Bse1I	ACTGG	6 cut(s)	105, 528, 556, 585, 970, 1216
Bse3DI	GCAATG	2 cut(s)	696, 873
BseAI	TCCGGA	2 cut(s)	379, 1099
BseDI	CCNNGG	3 cut(s)	208, 468, 855
BseGI	GGATG	4 cut(s)	292, 388, 1237, 1372
BseLI	CCNNNNNNNGG	3 cut(s)	551, 793, 1388
BseMI	GCAATG	2 cut(s)	696, 873
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	6 cut(s)	105, 528, 556, 585, 970, 1216
BseRI	GAGGAG	1 cut(s)	1242
BseXI	GCAGC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	836
BsiSI	CCGG	3 cut(s)	210, 380, 1100
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	3 cut(s)	551, 793, 1388
BsmAI	GTCTC	3 cut(s)	1257, 1268, 1286
BsmBI	CGTCTC	1 cut(s)	1268
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	253
Bsp119I	TTCGAA	2 cut(s)	221, 365
Bsp13I	TCCGGA	2 cut(s)	379, 1099
Bsp143I	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	3 cut(s)	61, 1029, 1076
BspCNI	CTCAG	1 cut(s)	450
BspEI	TCCGGA	2 cut(s)	379, 1099
BspLI	GGNNCC	3 cut(s)	528, 639, 838
BspPI	GGATC	6 cut(s)	449, 592, 775, 804, 1086, 1139
BspT104I	TTCGAA	2 cut(s)	221, 365
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	696, 873
BsrI	ACTGG	6 cut(s)	105, 528, 556, 585, 970, 1216
BssECI	CCNNGG	3 cut(s)	208, 468, 855
BssMI	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	2 cut(s)	468, 855
Bst2BI	CACGAG	1 cut(s)	588
Bst4CI	ACNGT	5 cut(s)	227, 280, 1108, 1133, 1223
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBI	TTCGAA	2 cut(s)	221, 365
BstC8I	GCNNGC	2 cut(s)	260, 340
BstDEI	CTNAG	4 cut(s)	254, 389, 437, 487
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	4 cut(s)	292, 388, 1237, 1372
BstKTI	GATC	8 cut(s)	457, 587, 770, 799, 898, 925, 1081, 1147
BstMAI	GTCTC	3 cut(s)	1257, 1268, 1286
BstMBI	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	3 cut(s)	17, 67, 506
BstX2I	RGATCY	5 cut(s)	584, 767, 895, 922, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	5 cut(s)	584, 767, 895, 922, 1144
BsuI	GTATCC	1 cut(s)	1211
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	292, 388, 1237, 1372
BtsIMutI	CAGTG	2 cut(s)	549, 1362
Cac8I	GCNNGC	2 cut(s)	260, 340
Cfr13I	GGNCC	1 cut(s)	638
CseI	GACGC	1 cut(s)	1085
Csp6I	GTAC	6 cut(s)	126, 138, 396, 822, 1129, 1309
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	4 cut(s)	304, 469, 496, 936
CviJI	RGCY	9 cut(s)	342, 421, 476, 600, 628, 786, 818, 929, 1370
CviKI_1	RGCY	9 cut(s)	342, 421, 476, 600, 628, 786, 818, 929, 1370
CviQI	GTAC	6 cut(s)	126, 138, 396, 822, 1129, 1309
DdeI	CTNAG	4 cut(s)	254, 389, 437, 487
DpnI	GATC	8 cut(s)	456, 586, 769, 798, 897, 924, 1080, 1146
DpnII	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
DraIII	CACNNNGTG	1 cut(s)	836
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	468, 855
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	4 cut(s)	354, 384, 614, 1386
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	468, 855
ErhI	CCWWGG	2 cut(s)	468, 855
Esp3I	CGTCTC	1 cut(s)	1268
FaeI	CATG	4 cut(s)	307, 472, 499, 939
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	303, 468, 495, 935
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	4 cut(s)	299, 395, 1244, 1359
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	960
HapII	CCGG	3 cut(s)	210, 380, 1100
HgaI	GACGC	1 cut(s)	1085
Hin1II	CATG	4 cut(s)	307, 472, 499, 939
HinfI	GANTC	4 cut(s)	13, 502, 1112, 1294
HpaII	CCGG	3 cut(s)	210, 380, 1100
HphI	GGTGA	5 cut(s)	94, 94, 464, 566, 788
Hpy188I	TCNGA	6 cut(s)	93, 334, 403, 633, 772, 1012
Hpy188III	TCNNGA	8 cut(s)	380, 647, 765, 899, 977, 1022, 1100, 1157
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	475, 512, 628, 771, 1382
HpyCH4III	ACNGT	5 cut(s)	227, 280, 1108, 1133, 1223
HpyCH4IV	ACGT	3 cut(s)	111, 1072, 1277
HpyCH4V	TGCA	3 cut(s)	275, 830, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	4 cut(s)	254, 389, 437, 487
HpySE526I	ACGT	3 cut(s)	111, 1072, 1277
Hsp92II	CATG	4 cut(s)	307, 472, 499, 939
Kpn2I	TCCGGA	2 cut(s)	379, 1099
Kzo9I	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
LmnI	GCTCC	2 cut(s)	74, 979
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	4 cut(s)	127, 262, 277, 715
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	111, 1072, 1277
MaeIII	GTNAC	4 cut(s)	107, 955, 1031, 1237
MalI	GATC	8 cut(s)	456, 586, 769, 798, 897, 924, 1080, 1146
MboI	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
MboII	GAAGA	8 cut(s)	8, 22, 67, 176, 511, 905, 932, 1154
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	5 cut(s)	584, 767, 895, 922, 1144
MlyI	GAGTC	3 cut(s)	7, 496, 1288
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	676, 994, 1010, 1260, 1263, 1395
MroI	TCCGGA	2 cut(s)	379, 1099
MseI	TTAA	1 cut(s)	1359
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	3 cut(s)	210, 380, 1100
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
NlaIII	CATG	4 cut(s)	307, 472, 499, 939
NlaIV	GGNNCC	3 cut(s)	528, 639, 838
NspI	RCATGY	1 cut(s)	939
NspV	TTCGAA	2 cut(s)	221, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	1078
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	1112
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	3 cut(s)	7, 496, 1288
PpsI	GAGTC	3 cut(s)	7, 496, 1288
PsiI	TTATAA	1 cut(s)	539
PspN4I	GGNNCC	3 cut(s)	528, 639, 838
PspPI	GGNCC	1 cut(s)	638
PsrI	GAACNNNNNNTAC	2 cut(s)	1024, 1056
PsuI	RGATCY	5 cut(s)	584, 767, 895, 922, 1144
RsaI	GTAC	6 cut(s)	127, 139, 397, 823, 1130, 1310
RsaNI	GTAC	6 cut(s)	126, 138, 396, 822, 1129, 1309
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	1359
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	8 cut(s)	454, 584, 767, 796, 895, 922, 1078, 1144
Sau96I	GGNCC	1 cut(s)	638
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	3 cut(s)	7, 496, 1288
ScrFI	CCNGG	1 cut(s)	210
SfaNI	GCATC	4 cut(s)	127, 262, 277, 715
SfuI	TTCGAA	2 cut(s)	221, 365
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SsiI	CCGC	3 cut(s)	61, 1029, 1076
SspI	AATATT	1 cut(s)	1049
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	2 cut(s)	468, 855
TaaI	ACNGT	5 cut(s)	227, 280, 1108, 1133, 1223
TaiI	ACGT	3 cut(s)	114, 1075, 1280
TaqI	TCGA	5 cut(s)	8, 221, 365, 646, 1081
TatI	WGTACW	3 cut(s)	137, 395, 1308
TfiI	GAWTC	1 cut(s)	1112
Tru1I	TTAA	1 cut(s)	1359
Tru9I	TTAA	1 cut(s)	1359
TscAI	CASTG	2 cut(s)	556, 1369
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	7 cut(s)	336, 418, 494, 512, 621, 707, 983
TspGWI	ACGGA	2 cut(s)	61, 433
TspRI	CASTG	2 cut(s)	556, 1369
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	5 cut(s)	557, 886, 904, 1004, 1245
XceI	RCATGY	1 cut(s)	939
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.