Rmu_sc0005805.1_g000001

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005805.1
N/A
Physical Location & Seq
Reverse (-)
8197 .. 8463
267 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
atgtataagaaggatgttgatgaagtaaatagaaggactagcgggactgatggaactgagcttgatgggacagatgtgattggaaacacaaaacatttgatgagtgcagtgaactccttacctgagttgactgcaaggaataagcaggtgattgatcataagcacacaaatatcgcaactgtgttattgggtgagatcaaggagaggtcgcttgatgcttttgccaacaaggagtatgccatgatcgctagagggggcattgattaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

5.87

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 2 - 83 3.2e-08 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AciI CCGC 1 cut(s) 42
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 160, 203
BccI CCATC 2 cut(s) 44, 59
BclI TGATCA 1 cut(s) 154
BfaI CTAG 2 cut(s) 39, 249
BfuAI ACCTGC 1 cut(s) 136
BmsI GCATC 1 cut(s) 205
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 48, 114
BsgI GTGCAG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 58, 82
BsmFI GGGAC 2 cut(s) 58, 82
Bsp143I GATC 3 cut(s) 154, 195, 243
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 49, 115
BspMI ACCTGC 1 cut(s) 136
BssMI GATC 3 cut(s) 154, 195, 243
Bst4CI ACNGT 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 57, 123
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 3 cut(s) 157, 198, 246
BstMBI GATC 3 cut(s) 154, 195, 243
BstMWI GCNNNNNNNGC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 136
CviAII CATG 1 cut(s) 241
CviJI RGCY 1 cut(s) 61
CviKI_1 RGCY 1 cut(s) 61
DdeI CTNAG 2 cut(s) 57, 123
DpnI GATC 3 cut(s) 156, 197, 245
DpnII GATC 3 cut(s) 154, 195, 243
FaeI CATG 1 cut(s) 244
FaiI YATR 4 cut(s) 6, 159, 237, 242
FaqI GGGAC 2 cut(s) 58, 82
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 154
FokI GGATG 1 cut(s) 26
FspBI CTAG 2 cut(s) 39, 249
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HphI GGTGA 2 cut(s) 160, 203
Hpy166II GTNNAC 2 cut(s) 112, 129
Hpy8I GTNNAC 2 cut(s) 112, 129
HpyAV CCTTC 2 cut(s) 4, 27
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 107, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 57, 123
Hsp92II CATG 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 3 cut(s) 154, 195, 243
LpnPI CCDG 2 cut(s) 131, 135
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 39, 249
MalI GATC 3 cut(s) 156, 197, 245
MboI GATC 3 cut(s) 154, 195, 243
MnlI CCTC 2 cut(s) 198, 245
MseI TTAA 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 3 cut(s) 154, 195, 243
NlaIII CATG 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 265
Sau3AI GATC 3 cut(s) 154, 195, 243
SetI ASST 4 cut(s) 63, 124, 150, 209
SfaNI GCATC 1 cut(s) 205
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 39, 249
TaaI ACNGT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 114
XspI CTAG 2 cut(s) 39, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.