Rmu_sc0005806.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005806.1
N/A
Physical Location & Seq
Forward (+)
56282 .. 60201
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atgttgaaaagaggaattactcctgactgtgacgtctttggtattctgataagagggtattgtgatgtgggtaatgatgttgccattttaggcacaccctgcattgctattagaaagtcatcttcaagaggggaagctggcttacagttcttgcaattatggaattgctggaatgttccatctgtgatcctcgtattggtctcacagtctaaggtgacagagaaacttgagaccttgaggctgttagagaaatgccttgagctggacgtgggaggattggttcttacagcaggcctgttgtttattggcaaggcagaaaaagaaattaaagtagcgctagaagagcgttttggcaatatccaagattccctcctccctgacttgaaggttcaatggaacaatatactcttcgccaacttcaagtctgttgctgaatataattcagaagctcttctcctcaaatccatgttaaggttttgtgaacaacctctcatagaacaagagctaattgagaagactctctccaccttccgcgtcgcagcacttttgctatcaaagcaatattgtactgaagtcaatgttggacgaattacgaggtttaatcagctcatcaatgttatgtctgtagctgaaaaacatgacaacatcctcgtgaagaattataattcaaggcccattggaactaagagcgtttatgaggcaaattataatgcacccaaaagagggcgcaaggagcggtaccctaataataggggacatgtgtaccctaaaaaagggggacatgagggacgtatgggtctatataaccgccccaataaggaaggaaaccgcaactttagagagggcacacatgatggcaacgccacacgtgggagaggtggatatggcaacaccagccgtggaagtagcaccatgggccgtggaggtagcactatgagccatggaggtagcaccatgaatcgtggtagtagctccaaccctcctagggaatatccacaacgtgcacgaagtgcacctcaaataaagggaggtaaccacaatgacatgtgccatcgatgtggatcaattgagtattggttcaagcaatgcaatgcaagtgcccaactagctgcacactacaaggagtatagggacttgagggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

381

Amino Acids

42.67

Weight (kDa)

9.46

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 663, 708
AasI GACNNNNNNGTC 2 cut(s) 32, 795
AatII GACGTC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 738
AccBSI CCGCTC 1 cut(s) 736
AccII CGCG 1 cut(s) 534
AciI CCGC 4 cut(s) 532, 736, 808, 829
AclWI GGATC 2 cut(s) 181, 1069
AcuI CTGAAG 1 cut(s) 591
AcvI CACGTG 1 cut(s) 869
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 2 cut(s) 1001, 1010
AfaI GTAC 3 cut(s) 568, 740, 764
AfeI AGCGCT 1 cut(s) 336
AfiI CCNNNNNNNGG 9 cut(s) 196, 262, 471, 722, 723, 773, 817, 870, 985
AflIII ACRYGT 3 cut(s) 757, 866, 1044
AgsI TTSAA 7 cut(s) 7, 126, 385, 392, 421, 669, 1081
AjiI CACGTC 1 cut(s) 268
AjuI GAANNNNNNNTTGG 4 cut(s) 333, 365, 564, 596
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 8 cut(s) 137, 262, 449, 505, 607, 629, 972, 1109
AluI AGCT 8 cut(s) 137, 262, 449, 505, 607, 629, 972, 1109
Alw21I GWGCWC 2 cut(s) 1006, 1015
Alw26I GTCTC 2 cut(s) 205, 224
Alw44I GTGCAC 2 cut(s) 1002, 1011
AlwI GGATC 2 cut(s) 181, 1069
Aor51HI AGCGCT 1 cut(s) 336
AoxI GGCC 3 cut(s) 292, 671, 916
ApaLI GTGCAC 2 cut(s) 1002, 1011
ApeKI GCWGC 2 cut(s) 539, 1109
Asp700I GAANNNNTTC 1 cut(s) 450
Asp718I GGTACC 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 983
AspLEI GCGC 2 cut(s) 337, 729
AspS9I GGNCC 2 cut(s) 672, 916
AsuHPI GGTGA 1 cut(s) 226
AvrII CCTAGG 1 cut(s) 983
BaeGI GKGCMC 4 cut(s) 848, 1006, 1015, 1102
BaeI ACNNNNGTAYC 2 cut(s) 746, 779
BanI GGYRCC 1 cut(s) 738
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BauI CACGAG 1 cut(s) 650
BbrPI CACGTG 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 1006, 1015
BbvI GCAGC 2 cut(s) 551, 1096
BccI CCATC 3 cut(s) 187, 848, 1059
BceAI ACGGC 2 cut(s) 882, 903
BcoDI GTCTC 2 cut(s) 205, 224
BfaI CTAG 3 cut(s) 338, 984, 1106
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 338
BisI GCNGC 2 cut(s) 540, 1110
BlnI CCTAGG 1 cut(s) 983
BlsI GCNGC 2 cut(s) 541, 1111
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 672, 916
BmiI GGNNCC 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 521
BpuEI CTTGAG 3 cut(s) 248, 256, 278
Bsa29I ATCGAT 1 cut(s) 1054
BsaAI YACGTR 1 cut(s) 869
BsaBI GATNNNNATC 1 cut(s) 1060
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 205, 224
BsaJI CCNNGG 5 cut(s) 898, 912, 919, 940, 983
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 9 cut(s) 196, 262, 471, 722, 723, 773, 817, 870, 985
Bse3DI GCAATG 3 cut(s) 102, 1091, 1096
Bse8I GATNNNNATC 1 cut(s) 1060
BseCI ATCGAT 1 cut(s) 1054
BseDI CCNNGG 5 cut(s) 898, 912, 919, 940, 983
BseGI GGATG 1 cut(s) 645
BseJI GATNNNNATC 1 cut(s) 1060
BseLI CCNNNNNNNGG 9 cut(s) 196, 262, 471, 722, 723, 773, 817, 870, 985
BseMI GCAATG 3 cut(s) 102, 1091, 1096
BseRI GAGGAG 2 cut(s) 362, 446
BseSI GKGCMC 4 cut(s) 848, 1006, 1015, 1102
BseXI GCAGC 2 cut(s) 551, 1096
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 3 cut(s) 294, 673, 918
BshNI GGYRCC 1 cut(s) 738
BshVI ATCGAT 1 cut(s) 1054
BsiHKAI GWGCWC 2 cut(s) 1006, 1015
BslFI GGGAC 3 cut(s) 768, 792, 801
BslI CCNNNNNNNGG 9 cut(s) 196, 262, 471, 722, 723, 773, 817, 870, 985
BsmAI GTCTC 2 cut(s) 205, 224
BsmFI GGGAC 3 cut(s) 768, 792, 801
BsnI GGCC 3 cut(s) 294, 673, 918
Bso31I GGTCTC 2 cut(s) 205, 224
Bsp1286I GDGCHC 4 cut(s) 848, 1006, 1015, 1102
Bsp143I GATC 2 cut(s) 186, 1061
Bsp19I CCATGG 2 cut(s) 912, 940
BspACI CCGC 4 cut(s) 532, 736, 808, 829
BspANI GGCC 3 cut(s) 294, 673, 918
BspDI ATCGAT 1 cut(s) 1054
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 740
BspPI GGATC 2 cut(s) 181, 1069
BspQI GCTCTTC 2 cut(s) 336, 456
BspT107I GGYRCC 1 cut(s) 738
BspTNI GGTCTC 2 cut(s) 205, 224
BsrBI CCGCTC 1 cut(s) 736
BsrDI GCAATG 3 cut(s) 102, 1091, 1096
BssECI CCNNGG 5 cut(s) 898, 912, 919, 940, 983
BssMI GATC 2 cut(s) 186, 1061
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 3 cut(s) 912, 940, 983
Bst2BI CACGAG 1 cut(s) 650
Bst4CI ACNGT 3 cut(s) 29, 147, 207
Bst6I CTCTTC 3 cut(s) 336, 413, 456
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 2 cut(s) 99, 1010
BstBAI YACGTR 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 139, 292
BstDEI CTNAG 2 cut(s) 210, 684
BstDSI CCRYGG 4 cut(s) 898, 912, 919, 940
BstEII GGTNACC 1 cut(s) 1031
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 1 cut(s) 645
BstFNI CGCG 1 cut(s) 534
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 337, 729
BstKTI GATC 2 cut(s) 189, 1064
BstMAI GTCTC 2 cut(s) 205, 224
BstMBI GATC 2 cut(s) 186, 1061
BstMWI GCNNNNNNNGC 9 cut(s) 99, 343, 556, 733, 894, 915, 936, 1010, 1106
BstNSI RCATGY 2 cut(s) 761, 1048
BstPI GGTNACC 1 cut(s) 1031
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 4 cut(s) 848, 1006, 1015, 1102
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 551, 1096
BstV2I GAAGAC 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 1058
Bsu15I ATCGAT 1 cut(s) 1054
BsuRI GGCC 3 cut(s) 294, 673, 918
BsuTUI ATCGAT 1 cut(s) 1054
BtgI CCRYGG 4 cut(s) 898, 912, 919, 940
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 645
Cac8I GCNNGC 2 cut(s) 139, 292
CfoI GCGC 2 cut(s) 337, 729
Cfr13I GGNCC 2 cut(s) 672, 916
ClaI ATCGAT 1 cut(s) 1054
CseI GACGC 1 cut(s) 523
Csp6I GTAC 3 cut(s) 567, 739, 763
CviAII CATG 9 cut(s) 466, 638, 758, 782, 851, 913, 941, 955, 1045
CviQI GTAC 3 cut(s) 567, 739, 763
DdeI CTNAG 2 cut(s) 210, 684
DpnI GATC 2 cut(s) 188, 1063
DpnII GATC 2 cut(s) 186, 1061
DraIII CACNNNGTG 2 cut(s) 1001, 1010
DrdI GACNNNNNNGTC 2 cut(s) 32, 795
DseDI GACNNNNNNGTC 2 cut(s) 32, 795
Eam1104I CTCTTC 3 cut(s) 336, 413, 456
EarI CTCTTC 3 cut(s) 336, 413, 456
Eco130I CCWWGG 3 cut(s) 912, 940, 983
Eco147I AGGCCT 1 cut(s) 294
Eco31I GGTCTC 2 cut(s) 205, 224
Eco47III AGCGCT 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 591
Eco72I CACGTG 1 cut(s) 869
Eco91I GGTNACC 1 cut(s) 1031
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO65I GGTNACC 1 cut(s) 1031
EcoT14I CCWWGG 3 cut(s) 912, 940, 983
ErhI CCWWGG 3 cut(s) 912, 940, 983
FaeI CATG 9 cut(s) 469, 641, 761, 785, 854, 916, 944, 958, 1048
FaqI GGGAC 3 cut(s) 768, 792, 801
FatI CATG 9 cut(s) 465, 637, 757, 781, 850, 912, 940, 954, 1044
Fnu4HI GCNGC 2 cut(s) 540, 1110
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 540, 1110
FspBI CTAG 3 cut(s) 338, 984, 1106
GlaI GCGC 2 cut(s) 336, 728
GluI GCNGC 2 cut(s) 540, 1110
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 3 cut(s) 294, 673, 918
HgaI GACGC 1 cut(s) 523
HhaI GCGC 2 cut(s) 337, 729
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 9 cut(s) 469, 641, 761, 785, 854, 916, 944, 958, 1048
Hin6I GCGC 2 cut(s) 335, 727
HinP1I GCGC 2 cut(s) 335, 727
HinfI GANTC 3 cut(s) 365, 517, 958
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 4 cut(s) 482, 763, 1004, 1013
Hpy188I TCNGA 2 cut(s) 48, 445
Hpy188III TCNNGA 3 cut(s) 23, 126, 652
Hpy8I GTNNAC 4 cut(s) 482, 763, 1004, 1013
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 379, 538, 815
HpyCH4III ACNGT 3 cut(s) 29, 147, 207
HpyCH4IV ACGT 5 cut(s) 33, 267, 790, 868, 1000
HpyCH4V TGCA 8 cut(s) 102, 154, 713, 1004, 1013, 1089, 1094, 1112
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 343, 556, 733, 894, 915, 936, 1010, 1106
HpyF3I CTNAG 2 cut(s) 210, 684
HpySE526I ACGT 5 cut(s) 33, 267, 790, 868, 1000
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 9 cut(s) 469, 641, 761, 785, 854, 916, 944, 958, 1048
HspAI GCGC 2 cut(s) 335, 727
KpnI GGTACC 1 cut(s) 742
Kzo9I GATC 2 cut(s) 186, 1061
LguI GCTCTTC 2 cut(s) 336, 456
LmnI GCTCC 2 cut(s) 733, 977
LpnPI CCDG 9 cut(s) 36, 112, 123, 154, 248, 276, 308, 390, 907
Lsp1109I GCAGC 2 cut(s) 551, 1096
MaeI CTAG 3 cut(s) 338, 984, 1106
MaeII ACGT 5 cut(s) 33, 267, 790, 868, 1000
MaeIII GTNAC 3 cut(s) 29, 214, 1031
MalI GATC 2 cut(s) 188, 1063
MbiI CCGCTC 1 cut(s) 736
MboI GATC 2 cut(s) 186, 1061
MboII GAAGA 6 cut(s) 114, 353, 400, 443, 526, 667
MfeI CAATTG 1 cut(s) 1065
MhlI GDGCHC 4 cut(s) 848, 1006, 1015, 1102
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 2 cut(s) 562, 999
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 3 cut(s) 327, 470, 600
MslI CAYNNNNRTG 2 cut(s) 650, 1056
MunI CAATTG 1 cut(s) 1065
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 9 cut(s) 99, 343, 556, 733, 894, 915, 936, 1010, 1106
NcoI CCATGG 2 cut(s) 912, 940
NdeII GATC 2 cut(s) 186, 1061
NlaIII CATG 9 cut(s) 469, 641, 761, 785, 854, 916, 944, 958, 1048
NlaIV GGNNCC 1 cut(s) 740
NmuCI GTSAC 2 cut(s) 29, 214
NspI RCATGY 2 cut(s) 761, 1048
PceI AGGCCT 1 cut(s) 294
PciI ACATGT 2 cut(s) 757, 1044
PciSI GCTCTTC 2 cut(s) 336, 456
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 365, 958
PkrI GCNGC 2 cut(s) 541, 1111
PleI GAGTC 1 cut(s) 511
PmaCI CACGTG 1 cut(s) 869
PmlI CACGTG 1 cut(s) 869
PpsI GAGTC 1 cut(s) 511
Ppu21I YACGTR 1 cut(s) 869
PscI ACATGT 2 cut(s) 757, 1044
PsiI TTATAA 2 cut(s) 663, 708
PspCI CACGTG 1 cut(s) 869
PspEI GGTNACC 1 cut(s) 1031
PspN4I GGNNCC 1 cut(s) 740
PspPI GGNCC 2 cut(s) 672, 916
RsaI GTAC 3 cut(s) 568, 740, 764
RsaNI GTAC 3 cut(s) 567, 739, 763
RseI CAYNNNNRTG 2 cut(s) 650, 1056
SapI GCTCTTC 2 cut(s) 336, 456
SaqAI TTAA 3 cut(s) 327, 470, 600
SatI GCNGC 2 cut(s) 540, 1110
Sau3AI GATC 2 cut(s) 186, 1061
Sau96I GGNCC 2 cut(s) 672, 916
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 4 cut(s) 848, 1006, 1015, 1102
SfcI CTRYAG 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 650, 1056
SmlI CTYRAG 4 cut(s) 227, 235, 257, 1135
SmoI CTYRAG 4 cut(s) 227, 235, 257, 1135
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 4 cut(s) 532, 736, 808, 829
SspI AATATT 1 cut(s) 563
SspMI CTAG 3 cut(s) 338, 984, 1106
StuI AGGCCT 1 cut(s) 294
StyI CCWWGG 3 cut(s) 912, 940, 983
TaaI ACNGT 3 cut(s) 29, 147, 207
TaiI ACGT 5 cut(s) 36, 270, 793, 871, 1003
TaqI TCGA 1 cut(s) 1054
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 2 cut(s) 365, 958
Tru1I TTAA 3 cut(s) 327, 470, 600
Tru9I TTAA 3 cut(s) 327, 470, 600
TseFI GTSAC 2 cut(s) 29, 214
TseI GCWGC 2 cut(s) 539, 1109
Tsp45I GTSAC 2 cut(s) 29, 214
TspDTI ATGAA 1 cut(s) 971
VneI GTGCAC 2 cut(s) 1002, 1011
XagI CCTNNNNNAGG 1 cut(s) 771
XceI RCATGY 2 cut(s) 761, 1048
XmaJI CCTAGG 1 cut(s) 983
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 3 cut(s) 338, 984, 1106
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.