Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005816.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

73003 .. 73962

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgtcttcatcttcttcttcttcttcttctaacctatcaaagtcatcatcatctgcaccaccaaagcttccattgaaaccaattctaggtgactatggcttacccttcttcggtgccatcaaagatcgttacaactatttctacaaccaaggaaaagatgagttcttcaaaacccgaatcagaaagtacaactccacagtctttcgtaccaatatgccacccggccccttcatcgcttcaaaccctaaagtcattgcagtcctcgacaccgtgagcttccctgttcttttcgacacttccaaagtcgaaaaacataatgtcctggatggcacttacatgccttcgacatccttcaccagcggctatcgcgtctgcgcctatctcgacccctcagaaccgaaccacgcttctctcaagtacttcttcttgtctctacttgccaatcgccaccacaagttcatcccactcttccaaaaccacttgtccgacctctttctcaacctggaaactgaaatttcaaaaattgggaaagcagacttcaacacctcgagcaacaacatgtcctttaatttcgttttctcactgttctatggatcagaaagtacttcattgggttccaaagggccgaccctggtggccgtatgggtagcgccgcaacttgcaccgcagatcacactcgggtggcccaagttgttgagctttgctgaagatttcttgctgcacacgttttcctacccttcattttttgtcaaatcgacctacaagaagctctacgatgcgttttacgagtcgtcagcttcggttttggatgaggctgagaatagttttgggattccgagagacgaagcttgtcacaacctgttgtttttggcttgcttcaatgcttttggtggcatgaagcttttgttccctgctttaatcaagtgggttggatccgcaggagaggatttgcaccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

319

Amino Acids

35.65

Weight (kDa)

8.56

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	369
AciI	CCGC	5 cut(s)	360, 653, 665, 936, 955
AclWI	GGATC	3 cut(s)	601, 927, 940
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	4 cut(s)	188, 208, 419, 604
AfiI	CCNNNNNNNGG	2 cut(s)	86, 110
AflIII	ACRYGT	2 cut(s)	558, 723
AgsI	TTSAA	6 cut(s)	76, 169, 240, 519, 541, 880
AjnI	CCWGG	3 cut(s)	321, 501, 630
AleI	CACNNNNGTG	1 cut(s)	679
AluBI	AGCT	7 cut(s)	67, 276, 699, 769, 797, 848, 901
AluI	AGCT	7 cut(s)	67, 276, 699, 769, 797, 848, 901
Alw26I	GTCTC	2 cut(s)	435, 834
AlwI	GGATC	3 cut(s)	601, 927, 940
Ama87I	CYCGRG	2 cut(s)	547, 677
AoxI	GGCC	4 cut(s)	223, 623, 636, 683
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	377, 652
AspS9I	GGNCC	3 cut(s)	224, 623, 684
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	101, 346
AvaI	CYCGRG	2 cut(s)	547, 677
BamHI	GGATCC	1 cut(s)	932
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	2 cut(s)	125, 320
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	3 cut(s)	323, 503, 632
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	435, 834
BfaI	CTAG	2 cut(s)	86, 958
BfoI	RGCGCY	1 cut(s)	653
BisI	GCNGC	3 cut(s)	361, 653, 719
BlsI	GCNGC	3 cut(s)	362, 654, 720
BmcAI	AGTACT	2 cut(s)	419, 604
Bme1390I	CCNGG	4 cut(s)	222, 323, 503, 632
BmeT110I	CYCGRG	2 cut(s)	547, 677
BmgT120I	GGNCC	3 cut(s)	224, 623, 684
BmiI	GGNNCC	4 cut(s)	115, 226, 616, 934
BmrFI	CCNGG	4 cut(s)	222, 323, 503, 632
BmsI	GCATC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	148, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 110
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	323, 503, 632
BseDI	CCNNGG	2 cut(s)	148, 630
BseGI	GGATG	4 cut(s)	331, 347, 459, 814
BseLI	CCNNNNNNNGG	2 cut(s)	86, 110
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	405, 807
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	2 cut(s)	39, 704
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	225, 625, 638, 685
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	2 cut(s)	547, 677
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	86, 110
BsmAI	GTCTC	2 cut(s)	435, 834
BsmBI	CGTCTC	1 cut(s)	834
BsnI	GGCC	4 cut(s)	225, 625, 638, 685
BsoBI	CYCGRG	2 cut(s)	547, 677
Bsp143I	GATC	4 cut(s)	124, 593, 669, 932
BspACI	CCGC	5 cut(s)	360, 653, 665, 936, 955
BspANI	GGCC	4 cut(s)	225, 625, 638, 685
BspCNI	CTCAG	2 cut(s)	404, 808
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	4 cut(s)	115, 226, 616, 934
BspPI	GGATC	3 cut(s)	601, 927, 940
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	148, 630
BssMI	GATC	4 cut(s)	124, 593, 669, 932
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	3 cut(s)	323, 503, 632
Bst4CI	ACNGT	3 cut(s)	199, 271, 585
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	2 cut(s)	391, 816
BstF5I	GGATG	4 cut(s)	331, 347, 459, 814
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	2 cut(s)	377, 652
BstKTI	GATC	4 cut(s)	127, 596, 672, 935
BstMAI	GTCTC	2 cut(s)	435, 834
BstMBI	GATC	4 cut(s)	124, 593, 669, 932
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	3 cut(s)	323, 503, 632
BstNSI	RCATGY	2 cut(s)	340, 562
BstSCI	CCNGG	4 cut(s)	220, 321, 501, 630
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	932
BstYI	RGATCY	1 cut(s)	932
BsuRI	GGCC	4 cut(s)	225, 625, 638, 685
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	331, 347, 459, 814
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	1 cut(s)	874
CfoI	GCGC	2 cut(s)	377, 652
Cfr13I	GGNCC	3 cut(s)	224, 623, 684
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	4 cut(s)	187, 207, 418, 603
CviAII	CATG	3 cut(s)	337, 559, 895
CviQI	GTAC	4 cut(s)	187, 207, 418, 603
DdeI	CTNAG	2 cut(s)	391, 816
DpnI	GATC	4 cut(s)	126, 595, 671, 934
DpnII	GATC	4 cut(s)	124, 593, 669, 932
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	2 cut(s)	547, 677
EcoRII	CCWGG	3 cut(s)	321, 501, 630
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	834
FaeI	CATG	3 cut(s)	340, 562, 898
FaiI	YATR	8 cut(s)	96, 215, 315, 338, 560, 591, 643, 896
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	3 cut(s)	336, 558, 894
Fnu4HI	GCNGC	3 cut(s)	361, 653, 719
FokI	GGATG	4 cut(s)	334, 338, 446, 821
Fsp4HI	GCNGC	3 cut(s)	361, 653, 719
FspBI	CTAG	2 cut(s)	86, 958
GlaI	GCGC	2 cut(s)	376, 651
GluI	GCNGC	3 cut(s)	361, 653, 719
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	225, 625, 638, 685
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	2 cut(s)	377, 652
Hin1II	CATG	3 cut(s)	340, 562, 898
Hin6I	GCGC	2 cut(s)	375, 650
HinP1I	GCGC	2 cut(s)	375, 650
HindIII	AAGCTT	3 cut(s)	65, 846, 899
HinfI	GANTC	3 cut(s)	177, 788, 832
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	101, 346
Hpy188I	TCNGA	5 cut(s)	182, 394, 487, 598, 837
Hpy188III	TCNNGA	1 cut(s)	383
HpyAV	CCTTC	5 cut(s)	115, 238, 351, 361, 747
HpyCH4III	ACNGT	3 cut(s)	199, 271, 585
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	5 cut(s)	56, 257, 662, 721, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	391, 816
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	3 cut(s)	340, 562, 898
HspAI	GCGC	2 cut(s)	375, 650
Kzo9I	GATC	4 cut(s)	124, 593, 669, 932
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	2 cut(s)	86, 958
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	3 cut(s)	89, 128, 851
MalI	GATC	4 cut(s)	126, 595, 671, 934
MboI	GATC	4 cut(s)	124, 593, 669, 932
MflI	RGATCY	1 cut(s)	932
MluCI	AATT	4 cut(s)	81, 513, 522, 568
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	2 cut(s)	510, 910
MnlI	CCTC	6 cut(s)	272, 400, 500, 556, 805, 937
MseI	TTAA	2 cut(s)	567, 917
MslI	CAYNNNNRTG	2 cut(s)	335, 679
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	4 cut(s)	222, 323, 503, 632
MvaI	CCWGG	3 cut(s)	323, 503, 632
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	4 cut(s)	124, 593, 669, 932
NlaIII	CATG	3 cut(s)	340, 562, 898
NlaIV	GGNNCC	4 cut(s)	115, 226, 616, 934
NmuCI	GTSAC	2 cut(s)	89, 851
NspI	RCATGY	2 cut(s)	340, 562
OliI	CACNNNNGTG	1 cut(s)	679
PaeR7I	CTCGAG	1 cut(s)	547
PciI	ACATGT	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	177, 832
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	362, 654, 720
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
PscI	ACATGT	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	321, 501, 630
PspGI	CCWGG	3 cut(s)	321, 501, 630
PspN4I	GGNNCC	4 cut(s)	115, 226, 616, 934
PspPI	GGNCC	3 cut(s)	224, 623, 684
PspXI	VCTCGAGB	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	932
RsaI	GTAC	4 cut(s)	188, 208, 419, 604
RsaNI	GTAC	4 cut(s)	187, 207, 418, 603
RseI	CAYNNNNRTG	2 cut(s)	335, 679
SaqAI	TTAA	2 cut(s)	567, 917
SatI	GCNGC	3 cut(s)	361, 653, 719
Sau3AI	GATC	4 cut(s)	124, 593, 669, 932
Sau96I	GGNCC	3 cut(s)	224, 623, 684
ScaI	AGTACT	2 cut(s)	419, 604
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	4 cut(s)	222, 323, 503, 632
SfaNI	GCATC	1 cut(s)	766
Sfr274I	CTCGAG	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	335, 679
SmlI	CTYRAG	2 cut(s)	413, 547
SmoI	CTYRAG	2 cut(s)	413, 547
Sse9I	AATT	4 cut(s)	81, 513, 522, 568
SsiI	CCGC	5 cut(s)	360, 653, 665, 936, 955
SspMI	CTAG	2 cut(s)	86, 958
StyD4I	CCNGG	4 cut(s)	220, 321, 501, 630
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	199, 271, 585
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	7 cut(s)	264, 291, 306, 344, 384, 548, 755
TasI	AATT	4 cut(s)	81, 513, 522, 568
TatI	WGTACW	3 cut(s)	186, 417, 602
TauI	GCSGC	2 cut(s)	363, 655
TfiI	GAWTC	2 cut(s)	177, 832
Tru1I	TTAA	2 cut(s)	567, 917
Tru9I	TTAA	2 cut(s)	567, 917
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	2 cut(s)	89, 851
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	2 cut(s)	89, 851
TspDTI	ATGAA	5 cut(s)	220, 448, 597, 729, 911
TspRI	CASTG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	340, 562
XhoI	CTCGAG	1 cut(s)	547
XspI	CTAG	2 cut(s)	86, 958
ZrmI	AGTACT	2 cut(s)	419, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.