Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005834.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

166 .. 1176

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggcaagggagattgctgtgtttttaaagaaatctggtgcgaaaggttatttgcctgacagttcaacattcaacatcgcaatggtttgtttgacaaaggaatcagctcatcctcagcatgacgtacatgatatatttgaaagttttatacatcgaggtggaaaaccaggatttggtacttatcttgcattaattgaagctatgtacaagtccggaaaccttgatgaggggaatcaaatctttgagcaaatgatcaaggatggacttgtatctagtgtcttctcatataacatggtaattgattgcttttgcaaagcccaaattatgcacatggcatcaaaggcttttggagatatgcagcagaaaggtattcctcctaaccttgtaacattcaatacacttcttaccggatattgcaaggctggagaggtaagtaaggcacatgaactgttaataatgctcctagaacatggtttcaaaccggatatattcacttttagtacaataattgacggactctgtcgggtgcacaagattgatgacgctttcgattgttttgctgagatggtcaggtgggggatcactccaaatgtcatcacatacaatatattgttacgcatcaaggatttgtgtttcgtcggagatattgctagaggagtgcgactaatgaaaagtatgcaggtagatggaataaaaccagatgcttactctttcagttatcttattcaaagtctttgtaggatgaacaaggttgagaaagcagaggaattttttcttgctatgttgagatcaggtttgaatcctgacaattatacatacagtgtttttatcaaggcattgtgtgacttgggaagacttgacgtggcaaaggagatattcctctctatggaagcatatgattgtttacccgattcttctatttgcaatgtaatgttggattctctggttcagcataaccgttttgaagaggcctgtagaatagtaaaaagttttgtcaggaggaaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009451 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0015980 GO:0016070 GO:0016310 GO:0016787 GO:0016788 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0033993 GO:0034641 GO:0042221 GO:0042773 GO:0042775 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

336

Amino Acids

37.95

Weight (kDa)

6.51

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	52 - 103	6.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	60 - 105	6.9e-09	PPR repeat family
PPR_long	PF17177	72 - 151	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	92 - 139	2.2e-14	PPR repeat family
PPR_3	PF13812	94 - 138	4.7e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	95 - 188	7.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	116 - 170	4.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	122 - 151	5.6e-11	PPR repeat
PPR_2	PF13041	126 - 175	1.2e-16	PPR repeat family
PPR	PF01535	129 - 159	6.5e-07	PPR repeat
PPR_3	PF13812	156 - 206	1.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	158 - 190	9.8e-11	PPR repeat
PPR	PF01535	164 - 194	5.8e-06	PPR repeat
PPR_2	PF13041	168 - 206	6.4e-14	PPR repeat family
PPR_long	PF17177	177 - 285	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	208 - 247	1.4e-06	PPR repeat family
PPR_1	PF12854	229 - 258	8.3e-08	PPR repeat
PPR_2	PF13041	241 - 282	1.5e-12	PPR repeat family
PPR_1	PF12854	265 - 297	3.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	212
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	1 cut(s)	767
AfaI	GTAC	4 cut(s)	126, 178, 206, 502
AfiI	CCNNNNNNNGG	3 cut(s)	173, 226, 886
AgsI	TTSAA	9 cut(s)	66, 73, 140, 197, 394, 478, 728, 799, 965
AjiI	CACGTC	1 cut(s)	862
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	107, 200
AluI	AGCT	2 cut(s)	107, 200
Alw21I	GWGCWC	1 cut(s)	531
Alw44I	GTGCAC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	969
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	767
AseI	ATTAAT	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	271, 859
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	254, 559, 680
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	168
BclI	TGATCA	1 cut(s)	252
BfaI	CTAG	3 cut(s)	273, 464, 651
BfmI	CTRYAG	1 cut(s)	973
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	862
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	344, 627, 691
BpiI	GAAGAC	2 cut(s)	271, 859
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	114
BsaWI	WCCGGW	3 cut(s)	212, 407, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 226, 886
Bse3DI	GCAATG	2 cut(s)	87, 931
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	109, 265, 747
BseLI	CCNNNNNNNGG	3 cut(s)	173, 226, 886
BseMI	GCAATG	2 cut(s)	87, 931
BseMII	CTCAG	2 cut(s)	128, 552
BseRI	GAGGAG	1 cut(s)	669
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	213, 408, 482
BslI	CCNNNNNNNGG	3 cut(s)	173, 226, 886
BsnI	GGCC	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	252, 579, 788
BspANI	GGCC	1 cut(s)	971
BspCNI	CTCAG	2 cut(s)	127, 553
BspEI	TCCGGA	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	87, 931
BsrGI	TGTACA	1 cut(s)	204
BssMI	GATC	3 cut(s)	252, 579, 788
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	62, 450, 821, 959
Bst6I	CTCTTC	1 cut(s)	960
BstAUI	TGTACA	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	114, 561
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	109, 265, 747
BstKTI	GATC	3 cut(s)	255, 582, 791
BstMBI	GATC	3 cut(s)	252, 579, 788
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	973
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	2 cut(s)	271, 859
BsuRI	GGCC	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	862
BtsCI	GGATG	3 cut(s)	109, 265, 747
BtsIMutI	CAGTG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	670
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	4 cut(s)	125, 177, 205, 501
CviAII	CATG	6 cut(s)	119, 128, 292, 331, 443, 470
CviJI	RGCY	6 cut(s)	107, 200, 317, 344, 422, 971
CviKI_1	RGCY	6 cut(s)	107, 200, 317, 344, 422, 971
CviQI	GTAC	4 cut(s)	125, 177, 205, 501
DdeI	CTNAG	2 cut(s)	114, 561
DpnI	GATC	3 cut(s)	254, 581, 790
DpnII	GATC	3 cut(s)	252, 579, 788
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
Eco147I	AGGCCT	1 cut(s)	971
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	166
FaeI	CATG	6 cut(s)	122, 131, 295, 334, 446, 473
FatI	CATG	6 cut(s)	118, 127, 291, 330, 442, 469
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	3 cut(s)	96, 272, 754
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	3 cut(s)	273, 464, 651
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	971
HapII	CCGG	3 cut(s)	213, 408, 482
HgaI	GACGC	1 cut(s)	551
Hin1II	CATG	6 cut(s)	122, 131, 295, 334, 446, 473
HinfI	GANTC	6 cut(s)	101, 232, 516, 799, 911, 938
HpaII	CCGG	3 cut(s)	213, 408, 482
Hpy166II	GTNNAC	2 cut(s)	529, 905
Hpy188I	TCNGA	1 cut(s)	641
Hpy188III	TCNNGA	3 cut(s)	213, 803, 997
Hpy8I	GTNNAC	2 cut(s)	529, 905
Hpy99I	CGWCG	1 cut(s)	641
HpyCH4III	ACNGT	4 cut(s)	62, 450, 821, 959
HpyCH4IV	ACGT	2 cut(s)	123, 861
HpyCH4V	TGCA	8 cut(s)	188, 312, 328, 358, 417, 529, 679, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	114, 561
HpySE526I	ACGT	2 cut(s)	123, 861
Hsp92II	CATG	6 cut(s)	122, 131, 295, 334, 446, 473
Kpn2I	TCCGGA	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 579, 788
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	344, 627, 691
MaeI	CTAG	3 cut(s)	273, 464, 651
MaeII	ACGT	2 cut(s)	123, 861
MaeIII	GTNAC	3 cut(s)	385, 612, 842
MalI	GATC	3 cut(s)	254, 581, 790
MboI	GATC	3 cut(s)	252, 579, 788
MboII	GAAGA	4 cut(s)	271, 864, 906, 977
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	6 cut(s)	192, 297, 321, 507, 767, 808
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	2 cut(s)	619, 915
MroI	TCCGGA	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	3 cut(s)	26, 191, 452
MslI	CAYNNNNRTG	2 cut(s)	80, 156
MspI	CCGG	3 cut(s)	213, 408, 482
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	3 cut(s)	252, 579, 788
NlaIII	CATG	6 cut(s)	122, 131, 295, 334, 446, 473
NmuCI	GTSAC	1 cut(s)	842
PceI	AGGCCT	1 cut(s)	971
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	101, 232, 799, 911, 938
PflFI	GACNNNGTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	519
RsaI	GTAC	4 cut(s)	126, 178, 206, 502
RsaNI	GTAC	4 cut(s)	125, 177, 205, 501
RseI	CAYNNNNRTG	2 cut(s)	80, 156
SaqAI	TTAA	3 cut(s)	26, 191, 452
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	3 cut(s)	252, 579, 788
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	3 cut(s)	344, 627, 691
SfcI	CTRYAG	1 cut(s)	973
SmiMI	CAYNNNNRTG	2 cut(s)	80, 156
Sse9I	AATT	6 cut(s)	192, 297, 321, 507, 767, 808
SseBI	AGGCCT	1 cut(s)	971
SspMI	CTAG	3 cut(s)	273, 464, 651
StuI	AGGCCT	1 cut(s)	971
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	4 cut(s)	62, 450, 821, 959
TaiI	ACGT	2 cut(s)	126, 864
TaqI	TCGA	2 cut(s)	154, 549
TasI	AATT	6 cut(s)	192, 297, 321, 507, 767, 808
TatI	WGTACW	2 cut(s)	204, 500
TfiI	GAWTC	5 cut(s)	101, 232, 799, 911, 938
Tru1I	TTAA	3 cut(s)	26, 191, 452
Tru9I	TTAA	3 cut(s)	26, 191, 452
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	3 cut(s)	459, 683, 758
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	826
Tth111I	GACNNNGTC	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	3 cut(s)	273, 464, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.