Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005837.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19414 .. 22859

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggcctatattgagttcgttgacagagacaatgagctcagacaatcaaaaccaccgacccctcaaccaccaccaccaccaagagttcccttggatccttgggaaagatccaagctctgcaagcagtttgcacctcctaaacaagataagagcaagtttttggaaattggggttttcgaattcgaaattgggaaagctcctgggctgggttcgaggcttcgagcttctaagggaaactggaaaagtgaagctgttaagcgttcttgttgcgaagggaatcgaagaagtgaagaactgattcaactgaagaaggctgcaaattgccagtttaggaaagggtcgggtgttggttgggcggcgcaagtagtgaacgacgtggatcgaggcgacgcaggtcgtgccggaatgggacttgcgaactcggctctgtgcatgcgatcagtgggtgaagggatggacactgggcctgagcctgatctgtcttattggacttggatttggacttcttctcttggggctcttttggactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

177

Amino Acids

19.54

Weight (kDa)

8.84

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	4 cut(s)	89, 102, 102, 387
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	302
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	5 cut(s)	37, 115, 197, 224, 251
AluI	AGCT	5 cut(s)	37, 115, 197, 224, 251
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	4 cut(s)	89, 102, 102, 387
AoxI	GGCC	2 cut(s)	3, 464
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	2 cut(s)	177, 183
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	39, 520
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	315, 357
BlsI	GCNGC	2 cut(s)	316, 358
Bme1390I	CCNGG	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	2 cut(s)	177, 183
BsaJI	CCNNGG	3 cut(s)	90, 98, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	242, 325, 466
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	90, 98, 200
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	52, 459
BseNI	ACTGG	3 cut(s)	242, 325, 466
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	5, 466
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	5, 466
Bsp119I	TTCGAA	2 cut(s)	177, 183
Bsp1286I	GDGCHC	2 cut(s)	39, 520
Bsp143I	GATC	5 cut(s)	94, 107, 379, 437, 475
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	5, 466
BspCNI	CTCAG	2 cut(s)	51, 460
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	4 cut(s)	89, 102, 102, 387
BspT104I	TTCGAA	2 cut(s)	177, 183
BsrI	ACTGG	3 cut(s)	242, 325, 466
BssECI	CCNNGG	3 cut(s)	90, 98, 200
BssMI	GATC	5 cut(s)	94, 107, 379, 437, 475
BssT1I	CCWWGG	2 cut(s)	90, 98
Bst2UI	CCWGG	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	2 cut(s)	177, 183
BstC8I	GCNNGC	2 cut(s)	122, 434
BstDEI	CTNAG	3 cut(s)	38, 228, 468
BstF5I	GGATG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	97, 110, 382, 440, 478
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	5 cut(s)	94, 107, 379, 437, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 398, 422
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	94, 107
BstYI	RGATCY	2 cut(s)	94, 107
BsuRI	GGCC	2 cut(s)	5, 466
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	447, 459
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	122, 434
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	398
CviAII	CATG	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	38, 228, 468
DpnI	GATC	5 cut(s)	96, 109, 381, 439, 477
DpnII	GATC	5 cut(s)	94, 107, 379, 437, 475
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	90, 98
Eco24I	GRGCYC	2 cut(s)	39, 520
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	90, 98
EcoT38I	GRGCYC	2 cut(s)	39, 520
ErhI	CCWWGG	2 cut(s)	90, 98
FaeI	CATG	1 cut(s)	436
FaiI	YATR	2 cut(s)	9, 434
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	315, 357
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	2 cut(s)	39, 520
Fsp4HI	GCNGC	2 cut(s)	315, 357
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	2 cut(s)	315, 357
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	5, 466
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	277, 298, 527
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	22, 370
Hpy188I	TCNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	22, 370
Hpy99I	CGWCG	2 cut(s)	377, 392
HpyAV	CCTTC	3 cut(s)	266, 304, 443
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	120, 131, 317, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 398, 422
HpyF3I	CTNAG	3 cut(s)	38, 228, 468
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	436
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	5 cut(s)	94, 107, 379, 437, 475
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	375
MalI	GATC	5 cut(s)	96, 109, 381, 439, 477
MboI	GATC	5 cut(s)	94, 107, 379, 437, 475
MboII	GAAGA	4 cut(s)	294, 302, 319, 498
MflI	RGATCY	2 cut(s)	94, 107
MhlI	GDGCHC	2 cut(s)	39, 520
MluCI	AATT	4 cut(s)	165, 179, 186, 319
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	4 cut(s)	72, 144, 207, 377
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	121, 398, 422
NdeII	GATC	5 cut(s)	94, 107, 379, 437, 475
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	401
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	2 cut(s)	177, 183
PaeI	GCATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	277, 298
PkrI	GCNGC	2 cut(s)	316, 358
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PshAI	GACNNNNGTC	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	94, 107
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	315, 357
Sau3AI	GATC	5 cut(s)	94, 107, 379, 437, 475
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	39, 520
SetI	ASST	8 cut(s)	39, 117, 136, 199, 226, 253, 378, 397
SfuI	TTCGAA	2 cut(s)	177, 183
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	4 cut(s)	165, 179, 186, 319
SsiI	CCGC	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	2 cut(s)	90, 98
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	6 cut(s)	177, 183, 212, 220, 280, 382
TasI	AATT	4 cut(s)	165, 179, 186, 319
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	277, 298
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	447, 466
TseI	GCWGC	1 cut(s)	314
TspRI	CASTG	2 cut(s)	447, 466
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.