Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005838.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 856

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgggcgatcctctggacagacttgaatcagaggacgccggaggatcgagcctgaaggacatggagatcgacccgcctttcagagaaagcaccgccacgaccgaggactggcggaaggcgcttgccaacgtcgtccccgccgtcgtcgttctgaggaccacggcgtgtcgtgccttcgatactgaagccgccggtgctagctatgccaccggctttgtcgtcgataagcgccgcgggatcatcctcaccaaccgccatgttgtcaagcctggacctgtagttgcggaagctatgtttgtcaatcgcgaagaagttccagtatatcctatctatagggatccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

114

Amino Acids

12.49

Weight (kDa)

4.97

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	234, 306
AciI	CCGC	9 cut(s)	74, 93, 112, 138, 189, 232, 234, 253, 284
AclWI	GGATC	4 cut(s)	2, 52, 245, 332
AcuI	CTGAAG	2 cut(s)	74, 204
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	201, 290
AluI	AGCT	2 cut(s)	201, 290
AlwI	GGATC	4 cut(s)	2, 52, 245, 332
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	121, 231
AspS9I	GGNCC	2 cut(s)	156, 272
AsuHPI	GGTGA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	156, 272
BamHI	GGATCC	1 cut(s)	337
BceAI	ACGGC	2 cut(s)	125, 177
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	276, 331
BfoI	RGCGCY	2 cut(s)	122, 232
BisI	GCNGC	2 cut(s)	189, 232
BlsI	GCNGC	2 cut(s)	190, 233
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	2 cut(s)	156, 272
BmgT120I	GGNCC	2 cut(s)	156, 272
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	270
BmtI	GCTAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	102, 159, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	191, 209
Bse1I	ACTGG	2 cut(s)	113, 317
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	102, 159, 232
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	113, 317
Bsh1236I	CGCG	2 cut(s)	234, 306
Bsh1285I	CGRYCG	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	39, 192, 210
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	7, 44, 66, 237, 337
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	9 cut(s)	74, 93, 112, 138, 189, 232, 234, 253, 284
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	2 cut(s)	234, 306
BspLI	GGNNCC	1 cut(s)	339
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	4 cut(s)	2, 52, 245, 332
BsrFI	RCCGGY	2 cut(s)	191, 209
BsrI	ACTGG	2 cut(s)	113, 317
BssAI	RCCGGY	2 cut(s)	191, 209
BssECI	CCNNGG	3 cut(s)	102, 159, 232
BssMI	GATC	5 cut(s)	7, 44, 66, 237, 337
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	123, 199
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	2 cut(s)	159, 232
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	2 cut(s)	234, 306
BstH2I	RGCGCY	2 cut(s)	122, 232
BstHHI	GCGC	2 cut(s)	121, 231
BstKTI	GATC	5 cut(s)	10, 47, 69, 240, 340
BstMBI	GATC	5 cut(s)	7, 44, 66, 237, 337
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 170, 194, 203
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	276, 331
BstUI	CGCG	2 cut(s)	234, 306
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	159, 232
BtsCI	GGATG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	123, 199
CfoI	GCGC	2 cut(s)	121, 231
Cfr10I	RCCGGY	2 cut(s)	191, 209
Cfr13I	GGNCC	2 cut(s)	156, 272
Cfr42I	CCGCGG	1 cut(s)	235
CseI	GACGC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	2 cut(s)	61, 257
CviJI	RGCY	6 cut(s)	51, 188, 201, 213, 268, 290
CviKI_1	RGCY	6 cut(s)	51, 188, 201, 213, 268, 290
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	5 cut(s)	9, 46, 68, 239, 339
DpnII	GATC	5 cut(s)	7, 44, 66, 237, 337
DraIII	CACNNNGTG	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	156, 272
Eco57I	CTGAAG	2 cut(s)	74, 204
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	64, 260
FaiI	YATR	6 cut(s)	62, 204, 258, 293, 322, 333
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	60, 256
FauI	CCCGC	3 cut(s)	81, 145, 227
Fnu4HI	GCNGC	2 cut(s)	189, 232
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	189, 232
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	120, 230
GluI	GCNGC	2 cut(s)	189, 232
HaeII	RGCGCY	2 cut(s)	122, 232
HapII	CCGG	3 cut(s)	39, 192, 210
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	121, 231
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	64, 260
Hin6I	GCGC	2 cut(s)	119, 229
HinP1I	GCGC	2 cut(s)	119, 229
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	3 cut(s)	39, 192, 210
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	31, 83, 153
Hpy188III	TCNNGA	2 cut(s)	14, 305
Hpy99I	CGWCG	4 cut(s)	134, 146, 149, 224
HpyAV	CCTTC	3 cut(s)	49, 109, 184
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 170, 194, 203
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	64, 260
HspAI	GCGC	2 cut(s)	119, 229
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	7, 44, 66, 237, 337
LpnPI	CCDG	9 cut(s)	52, 65, 94, 205, 223, 255, 282, 288, 330
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	129
MalI	GATC	5 cut(s)	9, 46, 68, 239, 339
MboI	GATC	5 cut(s)	7, 44, 66, 237, 337
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	1 cut(s)	337
MnlI	CCTC	6 cut(s)	21, 25, 35, 97, 147, 254
MroXI	GAANNNNTTC	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	3 cut(s)	39, 192, 210
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	2 cut(s)	234, 306
MwoI	GCNNNNNNNGC	4 cut(s)	118, 170, 194, 203
NdeII	GATC	5 cut(s)	7, 44, 66, 237, 337
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	64, 260
NlaIV	GGNNCC	1 cut(s)	339
NruI	TCGCGA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	190, 233
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	156, 272
PsuI	RGATCY	1 cut(s)	337
RruI	TCGCGA	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	235
SatI	GCNGC	2 cut(s)	189, 232
Sau3AI	GATC	5 cut(s)	7, 44, 66, 237, 337
Sau96I	GGNCC	2 cut(s)	156, 272
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	4 cut(s)	132, 203, 277, 292
SfcI	CTRYAG	2 cut(s)	276, 331
Sfr303I	CCGCGG	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	191
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	156, 272
SsiI	CCGC	9 cut(s)	74, 93, 112, 138, 189, 232, 234, 253, 284
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	4 cut(s)	47, 69, 177, 222
TaqII	GACCGA	1 cut(s)	116
TauI	GCSGC	2 cut(s)	191, 234
TfiI	GAWTC	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	156, 272
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.