Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005838.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

969 .. 2108

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgggttggaaagctgactgtaaaactcgggagtttgaatatcaacagtcacttcgtgcgtctgactcaccagcctgtaacccccatgaccccaagtcaccaagtgtactcgactcgctcaaccagcccaactgcctctctaagtgggacacggcgtttcacaccaagctgacggattttgtcaccgtcgcctccgtgttgaagtgcgtggactccgacgagccgagcctactggagaaggacttgactttgctgctgaatgtgagcttggacgatgacaacaaggtggatctggtggtggaaggagcgattgctagagtcgtggcggtgctgcaaggcagctcgccgaacaaccgggccgtggcgaagataatgttgaccagcttggccgtcgtggaggtcaacaagcccacaatcgggtcatacccatatgcaattcaagctttttttttgctccttagggacggcaagggtcgggagaagaaagaggaggcgacgacgctctatgctatctatcgtttccggacaattggctgcaggcagtacggtttcgattttaatccgcacgaaataaagcaaattgaacccgcaccaaataaagcgggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

202

Amino Acids

22.42

Weight (kDa)

5.95

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	4 cut(s)	326, 563, 588, 602
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	387
AdeI	CACNNNGTG	2 cut(s)	56, 104
AfaI	GTAC	2 cut(s)	108, 545
AfiI	CCNNNNNNNGG	3 cut(s)	361, 416, 417
AgsI	TTSAA	4 cut(s)	38, 202, 440, 584
AhdI	GACNNNNNGTC	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	14, 169, 267, 342, 384, 443
AluI	AGCT	6 cut(s)	14, 169, 267, 342, 384, 443
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	2 cut(s)	357, 387
ApeKI	GCWGC	4 cut(s)	253, 331, 339, 534
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	60, 90, 175
AvaI	CYCGRG	1 cut(s)	27
AxyI	CCTNAGG	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	240, 318, 351, 521
BceAI	ACGGC	4 cut(s)	168, 344, 374, 481
BcnI	CCSGG	1 cut(s)	356
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	535
BisI	GCNGC	4 cut(s)	254, 332, 340, 535
BlsI	GCNGC	4 cut(s)	255, 333, 341, 536
Bme1390I	CCNGG	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 416, 417
Bse1I	ACTGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	361, 416, 417
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	4 cut(s)	240, 318, 351, 521
BshFI	GGCC	2 cut(s)	359, 389
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	355, 523
BslFI	GGGAC	2 cut(s)	161, 476
BslI	CCNNNNNNNGG	3 cut(s)	361, 416, 417
BsmFI	GGGAC	2 cut(s)	161, 476
BsnI	GGCC	2 cut(s)	359, 389
BsoBI	CYCGRG	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	4 cut(s)	326, 563, 588, 602
BspANI	GGCC	2 cut(s)	359, 389
BspEI	TCCGGA	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	289
Bst4CI	ACNGT	4 cut(s)	20, 48, 187, 548
BstC8I	GCNNGC	2 cut(s)	344, 539
BstDEI	CTNAG	2 cut(s)	141, 458
BstDSI	CCRYGG	1 cut(s)	360
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 440
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	535
BstV1I	GCAGC	4 cut(s)	240, 318, 351, 521
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	359, 389
BtgI	CCRYGG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	344, 539
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	48, 508
Csp6I	GTAC	2 cut(s)	107, 544
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	2 cut(s)	107, 544
DdeI	CTNAG	2 cut(s)	141, 458
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	2 cut(s)	56, 104
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	387
Eam1105I	GACNNNNNGTC	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	27
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	87, 424, 430, 432, 507
FaqI	GGGAC	2 cut(s)	161, 476
FatI	CATG	1 cut(s)	85
FauI	CCCGC	2 cut(s)	595, 595
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	254, 332, 340, 535
Fsp4HI	GCNGC	4 cut(s)	254, 332, 340, 535
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	4 cut(s)	254, 332, 340, 535
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	359, 389
HapII	CCGG	2 cut(s)	355, 523
HgaI	GACGC	2 cut(s)	48, 508
Hin1II	CATG	1 cut(s)	89
HincII	GTYRAC	2 cut(s)	378, 403
HindII	GTYRAC	2 cut(s)	378, 403
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	65, 113, 212, 318
HpaII	CCGG	2 cut(s)	355, 523
HphI	GGTGA	3 cut(s)	60, 90, 175
Hpy166II	GTNNAC	4 cut(s)	107, 211, 378, 403
Hpy188I	TCNGA	2 cut(s)	64, 217
Hpy188III	TCNNGA	3 cut(s)	29, 476, 523
Hpy8I	GTNNAC	4 cut(s)	107, 211, 378, 403
Hpy99I	CGWCG	5 cut(s)	191, 221, 395, 499, 502
HpyAV	CCTTC	2 cut(s)	232, 296
HpyCH4III	ACNGT	4 cut(s)	20, 48, 187, 548
HpyCH4V	TGCA	3 cut(s)	334, 434, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 440
HpyF3I	CTNAG	2 cut(s)	141, 458
Hsp92II	CATG	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	305, 459
LpnPI	CCDG	9 cut(s)	84, 88, 137, 218, 278, 368, 394, 523, 536
Lsp1109I	GCAGC	4 cut(s)	240, 318, 351, 521
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	4 cut(s)	48, 77, 96, 181
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	379, 493
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	3 cut(s)	435, 528, 579
MlyI	GAGTC	4 cut(s)	59, 107, 206, 327
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	146, 202, 391, 481, 484
MroI	TCCGGA	1 cut(s)	522
MseI	TTAA	2 cut(s)	558, 607
MspI	CCGG	2 cut(s)	355, 523
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	124, 440
NciI	CCSGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	89
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	3 cut(s)	48, 96, 181
PkrI	GCNGC	4 cut(s)	255, 333, 341, 536
PleI	GAGTC	4 cut(s)	59, 107, 206, 326
PpsI	GAGTC	4 cut(s)	59, 107, 206, 326
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	108, 545
RsaNI	GTAC	2 cut(s)	107, 544
SaqAI	TTAA	2 cut(s)	558, 607
SatI	GCNGC	4 cut(s)	254, 332, 340, 535
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	4 cut(s)	59, 107, 206, 327
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	8 cut(s)	16, 171, 269, 288, 344, 386, 402, 445
SfcI	CTRYAG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	435, 528, 579
SsiI	CCGC	4 cut(s)	326, 563, 588, 602
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	20, 48, 187, 548
TaqI	TCGA	2 cut(s)	111, 552
TasI	AATT	3 cut(s)	435, 528, 579
TatI	WGTACW	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	558, 607
Tru9I	TTAA	2 cut(s)	558, 607
TseFI	GTSAC	3 cut(s)	48, 96, 181
TseI	GCWGC	4 cut(s)	253, 331, 339, 534
Tsp45I	GTSAC	3 cut(s)	48, 96, 181
TspGWI	ACGGA	2 cut(s)	184, 188
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.