Rmu_sc0005849.1_g000001

Selenium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005849.1
N/A
Physical Location & Seq
Reverse (-)
338 .. 1062
725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atggctacggatgtgagcgcggtgcagcacggtggagtagtagaagggaagagtcagggcaatggcgacgcggcatcatgctgcaagactgggccgggttacgccactccactccaggccatgtctggtcccagagagcaaatcctctatgtcactgctgtttactctggaaccgggattcagaagcctgattacctggccacagtggacgtggatccaaattctccaacttattcaaaagttatccacaggctgcctgtgccgaatttaggggatgaactgcatcactctgggtggaactcgtgcagttcttgccatggggatccatctgcgcagcgccgtttccttgtccttcctgcattggtgtaa

Protein Analysis

122

Amino Acids

12.81

Weight (kDa)

6.15

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 28 - 121 2.5e-44 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AccII CGCG 2 cut(s) 20, 71
AciI CCGC 2 cut(s) 20, 71
AclWI GGATC 4 cut(s) 209, 222, 317, 330
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 220, 265
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 237
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 2 cut(s) 114, 195
AlwI GGATC 4 cut(s) 209, 222, 317, 330
AoxI GGCC 3 cut(s) 92, 117, 198
ApeKI GCWGC 4 cut(s) 25, 81, 253, 334
ApoI RAATTY 2 cut(s) 220, 265
AspLEI GCGC 3 cut(s) 20, 334, 339
AspS9I GGNCC 2 cut(s) 92, 128
AsuC2I CCSGG 2 cut(s) 96, 175
AvaII GGWCC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 2 cut(s) 214, 322
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BauI CACGAG 1 cut(s) 301
BbvI GCAGC 4 cut(s) 37, 68, 240, 346
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 116, 197
BcnI CCSGG 2 cut(s) 96, 175
BfoI RGCGCY 1 cut(s) 340
BisI GCNGC 5 cut(s) 26, 72, 82, 254, 335
BlsI GCNGC 5 cut(s) 27, 73, 83, 255, 336
Bme1390I CCNGG 4 cut(s) 96, 116, 175, 197
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 92, 128
BmiI GGNNCC 4 cut(s) 130, 172, 216, 324
BmrFI CCNGG 4 cut(s) 96, 116, 175, 197
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 83, 292
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 96, 175
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 116, 197
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 16, 280
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 37, 68, 240, 346
BsgI GTGCAG 2 cut(s) 44, 325
Bsh1236I CGCG 2 cut(s) 20, 71
BshFI GGCC 3 cut(s) 94, 119, 200
BsiSI CCGG 2 cut(s) 95, 174
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 3 cut(s) 94, 119, 200
Bsp143I GATC 2 cut(s) 214, 322
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 2 cut(s) 20, 71
BspANI GGCC 3 cut(s) 94, 119, 200
BspFNI CGCG 2 cut(s) 20, 71
BspLI GGNNCC 4 cut(s) 130, 172, 216, 324
BspPI GGATC 4 cut(s) 209, 222, 317, 330
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 2 cut(s) 214, 322
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 116, 197
Bst4CI ACNGT 2 cut(s) 32, 205
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 16, 280
BstFNI CGCG 2 cut(s) 20, 71
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 3 cut(s) 20, 334, 339
BstKTI GATC 2 cut(s) 217, 325
BstMBI GATC 2 cut(s) 214, 322
BstMWI GCNNNNNNNGC 2 cut(s) 259, 312
BstNI CCWGG 2 cut(s) 116, 197
BstSCI CCNGG 4 cut(s) 94, 114, 173, 195
BstUI CGCG 2 cut(s) 20, 71
BstV1I GCAGC 4 cut(s) 37, 68, 240, 346
BstX2I RGATCY 2 cut(s) 214, 322
BstYI RGATCY 2 cut(s) 214, 322
BsuRI GGCC 3 cut(s) 94, 119, 200
BtgI CCRYGG 1 cut(s) 316
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 16, 280
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 153, 210
CfoI GCGC 3 cut(s) 20, 334, 339
Cfr13I GGNCC 2 cut(s) 92, 128
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 78, 121, 317
CviJI RGCY 6 cut(s) 5, 94, 119, 187, 200, 253
CviKI_1 RGCY 6 cut(s) 5, 94, 119, 187, 200, 253
DpnI GATC 2 cut(s) 216, 324
DpnII GATC 2 cut(s) 214, 322
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 114, 195
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 81, 124, 320
FaiI YATR 4 cut(s) 79, 122, 150, 318
FaqI GGGAC 1 cut(s) 114
FatI CATG 3 cut(s) 77, 120, 316
Fnu4HI GCNGC 5 cut(s) 26, 72, 82, 254, 335
FokI GGATG 2 cut(s) 23, 287
Fsp4HI GCNGC 5 cut(s) 26, 72, 82, 254, 335
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 3 cut(s) 19, 333, 338
GluI GCNGC 5 cut(s) 26, 72, 82, 254, 335
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 3 cut(s) 94, 119, 200
HapII CCGG 2 cut(s) 95, 174
HgaI GACGC 1 cut(s) 77
HhaI GCGC 3 cut(s) 20, 334, 339
Hin1II CATG 3 cut(s) 81, 124, 320
Hin6I GCGC 3 cut(s) 18, 332, 337
HinP1I GCGC 3 cut(s) 18, 332, 337
HinfI GANTC 2 cut(s) 52, 178
HpaII CCGG 2 cut(s) 95, 174
Hpy166II GTNNAC 2 cut(s) 163, 208
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 168
Hpy8I GTNNAC 2 cut(s) 163, 208
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 38, 362
HpyCH4III ACNGT 2 cut(s) 32, 205
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 25, 84, 283, 306, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 312
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 81, 124, 320
HspAI GCGC 3 cut(s) 18, 332, 337
Kzo9I GATC 2 cut(s) 214, 322
Lsp1109I GCAGC 4 cut(s) 37, 68, 240, 346
LweI GCATC 2 cut(s) 83, 292
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 98, 151
MalI GATC 2 cut(s) 216, 324
MboI GATC 2 cut(s) 214, 322
MboII GAAGA 1 cut(s) 61
MflI RGATCY 2 cut(s) 214, 322
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 2 cut(s) 220, 265
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 2 cut(s) 95, 174
MspR9I CCNGG 4 cut(s) 96, 116, 175, 197
MteI GCGCNGCGC 1 cut(s) 335
MvaI CCWGG 2 cut(s) 116, 197
MvnI CGCG 2 cut(s) 20, 71
MwoI GCNNNNNNNGC 2 cut(s) 259, 312
NciI CCSGG 2 cut(s) 96, 175
NcoI CCATGG 1 cut(s) 316
NdeII GATC 2 cut(s) 214, 322
NlaIII CATG 3 cut(s) 81, 124, 320
NlaIV GGNNCC 4 cut(s) 130, 172, 216, 324
NmuCI GTSAC 1 cut(s) 151
NsbI TGCGCA 1 cut(s) 333
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 5 cut(s) 27, 73, 83, 255, 336
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 114, 195
PspGI CCWGG 2 cut(s) 114, 195
PspN4I GGNNCC 4 cut(s) 130, 172, 216, 324
PspPI GGNCC 2 cut(s) 92, 128
PsuI RGATCY 2 cut(s) 214, 322
SatI GCNGC 5 cut(s) 26, 72, 82, 254, 335
Sau3AI GATC 2 cut(s) 214, 322
Sau96I GGNCC 2 cut(s) 92, 128
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 4 cut(s) 96, 116, 175, 197
SetI ASST 2 cut(s) 198, 213
SfaNI GCATC 2 cut(s) 83, 292
SinI GGWCC 1 cut(s) 128
Sse9I AATT 2 cut(s) 220, 265
SsiI CCGC 2 cut(s) 20, 71
StyD4I CCNGG 4 cut(s) 94, 114, 173, 195
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 32, 205
TaiI ACGT 1 cut(s) 213
TasI AATT 2 cut(s) 220, 265
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 2 cut(s) 160, 210
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 25, 81, 253, 334
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 2 cut(s) 160, 210
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 2 cut(s) 220, 265
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.