Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005856.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

152016 .. 154269

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgacagtggatgatgtgtatctatctttccttcctctggctcatatcctggactgcgtaattgagatgtattttttccgcaatggtgcttctgttggctactatcatggggatcttaatgcattaggggatgatataatggagttgaagccaacacttcttgctgggaattcttgcgagttacttgctgttgtttcgtactccaaggctatggtaaacaaatggttgacagaaactgttggcccaactactctcgggtttcctgatgaaatgtgcatgattggtgctgttggtaccgtatctgttttcaacgagctgcgcctcgaagaggttccagaaatgggctacaatccacttggggatcctccttgtggtgagatatgcttgagaggaaagactgttttttctggctatcacaaaagtcctgaattgacaagagaagcaattaaggatggatggttccatacaggggacatagggcaaatacttccaaatggaaccatcaagatcattgataggaaaaagaatctgattaaactctcgcaaggagagtatgttgcacttgagtacttggaaaatgtatatggcatttcatctgttattgacgatatctgggtatatgggaatagcttcaagtcgaagcttgttgccgtggtggtagcagaagaagaaagcacgaagaggtgggctgatttaaatggtcacgttggttcattttctgatctttgttttcttgatcagctcaagagccatatcctggaagaactcaagttaacagctgagaagaacaagctgagaggtttcgagtatattaaaggaatcattgttgagcctcgccccttcgacatggaaagagacatggtgactgcaactttgaaaaagaaaagaaatcaattgctcaagtattaccaggctagacttgatgagctctaccaaaatctggacgctggacgaaaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

320

Amino Acids

36.09

Weight (kDa)

5.22

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	3 - 56	6.7e-06	AMP-binding enzyme
AMP-binding	PF00501	75 - 139	3.6e-07	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	2 cut(s)	757, 940
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	3 cut(s)	120, 356, 369
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	3 cut(s)	200, 295, 569
AfiI	CCNNNNNNNGG	7 cut(s)	37, 328, 341, 371, 469, 757, 940
AgsI	TTSAA	4 cut(s)	148, 310, 634, 877
AjnI	CCWGG	3 cut(s)	48, 756, 909
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	7 cut(s)	316, 630, 643, 742, 779, 793, 928
AluI	AGCT	7 cut(s)	316, 630, 643, 742, 779, 793, 928
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	849
AlwI	GGATC	3 cut(s)	120, 356, 369
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
Asp700I	GAANNNNTTC	2 cut(s)	330, 629
Asp718I	GGTACC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	386, 874
AvaI	CYCGRG	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	930
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	3 cut(s)	446, 450, 509
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	3 cut(s)	50, 758, 911
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	1 cut(s)	915
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	3 cut(s)	50, 758, 911
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	5 cut(s)	295, 333, 363, 461, 499
BmrFI	CCNGG	3 cut(s)	50, 758, 911
BpuEI	CTTGAG	5 cut(s)	406, 584, 728, 752, 884
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	204, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 328, 341, 371, 469, 757, 940
Bse3DI	GCAATG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	50, 758, 911
BseDI	CCNNGG	2 cut(s)	204, 651
BseGI	GGATG	4 cut(s)	16, 136, 457, 461
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	7 cut(s)	37, 328, 341, 371, 469, 757, 940
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	771, 785
BseXI	GCAGC	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	7 cut(s)	37, 328, 341, 371, 469, 757, 940
BsmAI	GTCTC	1 cut(s)	849
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp143I	GATC	5 cut(s)	112, 361, 507, 721, 736
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	772, 786
BspLI	GGNNCC	5 cut(s)	295, 333, 363, 461, 499
BspPI	GGATC	3 cut(s)	120, 356, 369
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	204, 651
BssMI	GATC	5 cut(s)	112, 361, 507, 721, 736
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	50, 758, 911
Bst4CI	ACNGT	4 cut(s)	7, 238, 298, 400
Bst6I	CTCTTC	2 cut(s)	321, 674
BstDEI	CTNAG	2 cut(s)	780, 794
BstDSI	CCRYGG	1 cut(s)	651
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	4 cut(s)	16, 136, 457, 461
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	115, 364, 510, 724, 739
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	5 cut(s)	112, 361, 507, 721, 736
BstNI	CCWGG	3 cut(s)	50, 758, 911
BstSCI	CCNGG	3 cut(s)	48, 756, 909
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	112, 361
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	2 cut(s)	112, 361
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	16, 136, 457, 461
BtsIMutI	CAGTG	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	3 cut(s)	199, 294, 568
CviAII	CATG	4 cut(s)	107, 277, 847, 859
CviQI	GTAC	3 cut(s)	199, 294, 568
DdeI	CTNAG	2 cut(s)	780, 794
DpnI	GATC	5 cut(s)	114, 363, 509, 723, 738
DpnII	GATC	5 cut(s)	112, 361, 507, 721, 736
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	321, 674
EarI	CTCTTC	2 cut(s)	321, 674
Ecl136II	GAGCTC	1 cut(s)	928
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	930
Eco32I	GATATC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	928
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	928
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	48, 756, 909
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	110, 280, 850, 862
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	106, 276, 846, 858
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	4 cut(s)	23, 143, 464, 468
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	915
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	317
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	243
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	110, 280, 850, 862
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	2 cut(s)	228, 774
HindII	GTYRAC	2 cut(s)	228, 774
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	526, 819
HpaI	GTTAAC	1 cut(s)	774
HphI	GGTGA	2 cut(s)	386, 874
Hpy166II	GTNNAC	3 cut(s)	217, 228, 774
Hpy188I	TCNGA	2 cut(s)	531, 721
Hpy188III	TCNNGA	7 cut(s)	263, 335, 425, 505, 734, 745, 941
Hpy8I	GTNNAC	3 cut(s)	217, 228, 774
HpyAV	CCTTC	2 cut(s)	41, 850
HpyCH4III	ACNGT	4 cut(s)	7, 238, 298, 400
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	4 cut(s)	122, 276, 560, 869
HpyF3I	CTNAG	2 cut(s)	780, 794
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	110, 280, 850, 862
HspAI	GCGC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	774
Kzo9I	GATC	5 cut(s)	112, 361, 507, 721, 736
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	3 cut(s)	180, 701, 862
MalI	GATC	5 cut(s)	114, 363, 509, 723, 738
MboI	GATC	5 cut(s)	112, 361, 507, 721, 736
MboII	GAAGA	6 cut(s)	338, 677, 680, 691, 773, 796
MfeI	CAATTG	1 cut(s)	893
MflI	RGATCY	2 cut(s)	112, 361
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	5 cut(s)	60, 169, 428, 444, 893
MnlI	CCTC	8 cut(s)	45, 322, 332, 375, 383, 675, 791, 843
Mph1103I	ATGCAT	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	330, 629
MseI	TTAA	6 cut(s)	117, 447, 534, 695, 773, 813
MspA1I	CMGCKG	1 cut(s)	779
MspR9I	CCNGG	3 cut(s)	50, 758, 911
MunI	CAATTG	1 cut(s)	893
MvaI	CCWGG	3 cut(s)	50, 758, 911
NdeII	GATC	5 cut(s)	112, 361, 507, 721, 736
NlaIII	CATG	4 cut(s)	110, 280, 850, 862
NlaIV	GGNNCC	5 cut(s)	295, 333, 363, 461, 499
NmuCI	GTSAC	2 cut(s)	701, 862
NsiI	ATGCAT	1 cut(s)	124
PdmI	GAANNNNTTC	2 cut(s)	330, 629
PfeI	GAWTC	2 cut(s)	526, 819
PflMI	CCANNNNNTGG	2 cut(s)	757, 940
PfoI	TCCNGGA	2 cut(s)	48, 756
PkrI	GCNGC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	930
Psp6I	CCWGG	3 cut(s)	48, 756, 909
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	3 cut(s)	48, 756, 909
PspN4I	GGNNCC	5 cut(s)	295, 333, 363, 461, 499
PspPI	GGNCC	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	112, 361
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	200, 295, 569
RsaNI	GTAC	3 cut(s)	199, 294, 568
SacI	GAGCTC	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	117, 447, 534, 695, 773, 813
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	5 cut(s)	112, 361, 507, 721, 736
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	50, 758, 911
SduI	GDGCHC	1 cut(s)	930
SmiI	ATTTAAAT	1 cut(s)	696
SmlI	CTYRAG	5 cut(s)	385, 563, 743, 767, 899
SmoI	CTYRAG	5 cut(s)	385, 563, 743, 767, 899
Sse9I	AATT	5 cut(s)	60, 169, 428, 444, 893
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	959
SspMI	CTAG	1 cut(s)	915
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	3 cut(s)	48, 756, 909
StyI	CCWWGG	1 cut(s)	204
SwaI	ATTTAAAT	1 cut(s)	696
TaaI	ACNGT	4 cut(s)	7, 238, 298, 400
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	4 cut(s)	324, 638, 804, 843
TasI	AATT	5 cut(s)	60, 169, 428, 444, 893
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	526, 819
Tru1I	TTAA	6 cut(s)	117, 447, 534, 695, 773, 813
Tru9I	TTAA	6 cut(s)	117, 447, 534, 695, 773, 813
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	701, 862
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	701, 862
TspDTI	ATGAA	3 cut(s)	282, 582, 702
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	2 cut(s)	757, 940
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	330, 629
XspI	CTAG	1 cut(s)	915
ZrmI	AGTACT	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.