Rmu_sc0005870.1_g000015

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005870.1
N/A
Physical Location & Seq
Forward (+)
68326 .. 73255
4930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
atgttcctgtcatggccttcagcttcggtttctggtctagatggttggcggcgagtgattgggacctccaagcctcggtctcggcgaccgattccatccactcatgtttttttccggctcgaccttcaattcaggcaagttgtattgggtctagagaagcaacgatttgtggtgaaggttgagtttgctaaccatccgttgttcaaggtattgttagaggatgctgcaaagatattcgcaaattatgtacttaaaattagcccaccccatttggatcctggatccgccactaaatatgggtacagtagtggaggtctaattatacttccttgcgatgtggaattgttctacaatgtattggcagagatggagaacaatgggggagaggatgaggaatctgacggcggagctctggtattttcttttctctgcaacaaggctctgtttccgattcatcttttgaagacattacgaggtaacttgaacaaattggactttgctccattgggaacaactggctctgaatatcacaggtgggttcgtgatgtccgccagcatctcaaggccgatggaatcctggatatgattatcgagcctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttaggcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

221

Amino Acids

24.67

Weight (kDa)

7.02

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 49, 285, 405, 550
AclWI GGATC 4 cut(s) 269, 276, 282, 289
AfaI GTAC 2 cut(s) 249, 302
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 128, 205, 463, 484
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 3 cut(s) 277, 576, 600
AluBI AGCT 4 cut(s) 23, 410, 626, 632
AluI AGCT 4 cut(s) 23, 410, 626, 632
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 4 cut(s) 269, 276, 282, 289
AoxI GGCC 2 cut(s) 14, 564
ApeKI GCWGC 2 cut(s) 224, 650
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 655
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BamHI GGATCC 2 cut(s) 274, 281
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 211, 662
BccI CCATC 5 cut(s) 35, 103, 201, 361, 563
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 3 cut(s) 279, 578, 602
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 3 cut(s) 38, 152, 597
BisI GCNGC 3 cut(s) 50, 225, 651
BlsI GCNGC 3 cut(s) 51, 226, 652
Bme1390I CCNGG 3 cut(s) 279, 578, 602
Bme18I GGWCC 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 64, 276, 283
BmrFI CCNGG 3 cut(s) 279, 578, 602
BmsI GCATC 2 cut(s) 211, 565
BpiI GAAGAC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 545, 612
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 655
BseBI CCWGG 3 cut(s) 279, 578, 602
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 4 cut(s) 95, 193, 226, 394
BseLI CCNNNNNNNGG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 520
BseXI GCAGC 2 cut(s) 211, 662
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 16, 566
BsiEI CGRYCG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 16, 566
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 274, 281
BspACI CCGC 4 cut(s) 49, 285, 405, 550
BspANI GGCC 2 cut(s) 16, 566
BspLI GGNNCC 3 cut(s) 64, 276, 283
BspPI GGATC 4 cut(s) 269, 276, 282, 289
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 274, 281
Bst2UI CCWGG 3 cut(s) 279, 578, 602
Bst4CI ACNGT 2 cut(s) 305, 616
BstC8I GCNNGC 2 cut(s) 554, 624
BstDEI CTNAG 1 cut(s) 655
BstF5I GGATG 4 cut(s) 95, 193, 226, 394
BstKTI GATC 2 cut(s) 277, 284
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 274, 281
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 638, 647
BstNI CCWGG 3 cut(s) 279, 578, 602
BstSCI CCNGG 3 cut(s) 277, 576, 600
BstV1I GCAGC 2 cut(s) 211, 662
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 274, 281
BstYI RGATCY 2 cut(s) 274, 281
Bsu36I CCTNAGG 1 cut(s) 655
BsuRI GGCC 2 cut(s) 16, 566
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 4 cut(s) 95, 193, 226, 394
Cac8I GCNNGC 2 cut(s) 554, 624
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 248, 301
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 2 cut(s) 12, 104
CviQI GTAC 2 cut(s) 248, 301
DdeI CTNAG 1 cut(s) 655
DpnI GATC 2 cut(s) 276, 283
DpnII GATC 2 cut(s) 274, 281
EciI GGCGGA 3 cut(s) 274, 420, 539
Ecl136II GAGCTC 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 277, 576, 600
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 2 cut(s) 15, 107
FaiI YATR 6 cut(s) 13, 105, 246, 297, 323, 584
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 11, 103
Fnu4HI GCNGC 3 cut(s) 50, 225, 651
FokI GGATG 4 cut(s) 82, 180, 233, 401
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 50, 225, 651
FspBI CTAG 3 cut(s) 38, 152, 597
GluI GCNGC 3 cut(s) 50, 225, 651
HaeIII GGCC 2 cut(s) 16, 566
HapII CCGG 1 cut(s) 115
Hin1II CATG 2 cut(s) 15, 107
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 4 cut(s) 91, 395, 451, 573
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 400, 450, 523
Hpy188III TCNNGA 3 cut(s) 38, 152, 542
HpyAV CCTTC 3 cut(s) 27, 134, 169
HpyCH4III ACNGT 2 cut(s) 305, 616
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 2 cut(s) 227, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 638, 647
HpyF3I CTNAG 1 cut(s) 655
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 2 cut(s) 15, 107
Kzo9I GATC 2 cut(s) 274, 281
LmnI GCTCC 2 cut(s) 407, 505
Lsp1109I GCAGC 2 cut(s) 211, 662
LweI GCATC 2 cut(s) 211, 565
MaeI CTAG 3 cut(s) 38, 152, 597
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 476
MalI GATC 2 cut(s) 276, 283
MboI GATC 2 cut(s) 274, 281
MboII GAAGA 1 cut(s) 475
MflI RGATCY 2 cut(s) 274, 281
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 6 cut(s) 128, 241, 255, 318, 341, 488
MnlI CCTC 7 cut(s) 76, 84, 211, 305, 379, 385, 467
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 3 cut(s) 279, 578, 602
MvaI CCWGG 3 cut(s) 279, 578, 602
MwoI GCNNNNNNNGC 2 cut(s) 638, 647
NdeII GATC 2 cut(s) 274, 281
NlaIII CATG 2 cut(s) 15, 107
NlaIV GGNNCC 3 cut(s) 64, 276, 283
NmeAIII GCCGAG 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PfeI GAWTC 4 cut(s) 91, 395, 451, 573
PfoI TCCNGGA 2 cut(s) 277, 576
PkrI GCNGC 3 cut(s) 51, 226, 652
PpuMI RGGWCCY 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 277, 576, 600
PspGI CCWGG 3 cut(s) 277, 576, 600
PspN4I GGNNCC 3 cut(s) 64, 276, 283
PspPI GGNCC 1 cut(s) 63
PspPPI RGGWCCY 1 cut(s) 63
PsuI RGATCY 2 cut(s) 274, 281
RsaI GTAC 2 cut(s) 249, 302
RsaNI GTAC 2 cut(s) 248, 301
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 50, 225, 651
Sau3AI GATC 2 cut(s) 274, 281
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 3 cut(s) 279, 578, 602
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 211, 565
SinI GGWCC 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 560, 627
SmoI CTYRAG 2 cut(s) 560, 627
Sse9I AATT 6 cut(s) 128, 241, 255, 318, 341, 488
SsiI CCGC 4 cut(s) 49, 285, 405, 550
SspMI CTAG 3 cut(s) 38, 152, 597
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 3 cut(s) 277, 576, 600
TaaI ACNGT 2 cut(s) 305, 616
TaiI ACGT 1 cut(s) 609
TaqI TCGA 2 cut(s) 120, 591
TaqII GACCGA 2 cut(s) 66, 103
TasI AATT 6 cut(s) 128, 241, 255, 318, 341, 488
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 4 cut(s) 91, 395, 451, 573
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 2 cut(s) 224, 650
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 63
XbaI TCTAGA 2 cut(s) 37, 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XspI CTAG 3 cut(s) 38, 152, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.