Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005878.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3657 .. 12288

Gene Structure 8632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggccgcaaagattcttgctaacttaattgtgatgggttccggtatactggcgagggccgtggttcaggcatatcgtcaagcacttgcaagtatgttttcttttatcattgtatctcaatgcctggcttgcagctctcgtatgcttttctcattagaaatagatgattggaggctttggagggcacctaggcgagcgcctaaatgtctgggcggttgggcggaacaggctgggcgattgggcgatgcggaattcacggtgaagcttctgcacaacggcggacttcccagcaagcatggtgcacaagtcgacttacgtgctgagcgtgcgagttttgatgctggagtcgtgaatagagttgctggaggaaggagagattttggtgctggtggagattgtcgaggttggatcgcagaggcagacagagatatttctggagatcgtggtgccgactgccgaaaccaccgatatttctgcaagtctgcaactgggagggctttttttggaaatattcaaatgggttttttgaattgcagagatgagggcttgtcatcggaggccttgaacggcaataaggctctgatcagatccattccgctccaatccgcgtacgtcatcatgtttctcttcgactggttctacagattgggtggggtttgggcatgtggttgcggtatattgaacaatgaggtcgaggtcaagtactcgagttcccagctgcatcgcatggatgcctcgaaatctggtgttgcccaagaaacgctacaaaatgctgctcgtaaagcaggcaaagtcatgacggagcaagaagctaggcagattcttggtatctcagagggaaccacttgggaggaagtcttgaagaaatacgacacattatttgaaaacaataccaagaacgggagcttttacctccagtcaaaagttcacagggccaaggaatgtttagaagctgcctataaagataaaggtcaaggtacccctaccccaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010817 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019866 GO:0030150 GO:0031090 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032101 GO:0032102 GO:0032879 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1900424 GO:1900425 GO:1902007 GO:1902009 GO:1902288 GO:1902289 GO:1990542 GO:2000012 GO:2000377 GO:2000378

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

331

Amino Acids

36.39

Weight (kDa)

9.07

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	245 - 322	2.1e-13	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	3 cut(s)	184, 446, 977
AccBSI	CCGCTC	1 cut(s)	598
AccI	GTMKAC	2 cut(s)	46, 309
AccII	CGCG	1 cut(s)	608
AciI	CCGC	8 cut(s)	6, 213, 221, 248, 279, 596, 606, 672
AclWI	GGATC	2 cut(s)	416, 582
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	3 cut(s)	611, 704, 979
AfiI	CCNNNNNNNGG	1 cut(s)	900
AgsI	TTSAA	6 cut(s)	515, 529, 565, 682, 862, 884
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	6 cut(s)	135, 265, 718, 812, 906, 953
AluI	AGCT	6 cut(s)	135, 265, 718, 812, 906, 953
Alw21I	GWGCWC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	416, 582
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	4 cut(s)	3, 57, 558, 933
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	132, 718, 773, 953
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
Asp718I	GGTACC	1 cut(s)	977
AspA2I	CCTAGG	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	57, 933
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	706
AvrII	CCTAGG	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	187, 304
BanI	GGYRCC	3 cut(s)	184, 446, 977
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	144, 705, 760, 940
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	3 cut(s)	44, 292, 583
BcgI	CGANNNNNNTGC	4 cut(s)	299, 333, 456, 490
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	582
BfaI	CTAG	2 cut(s)	189, 813
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	5 cut(s)	6, 133, 719, 774, 954
BlnI	CCTAGG	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	7, 134, 720, 775, 955
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	57, 933
BmiI	GGNNCC	5 cut(s)	40, 186, 448, 841, 979
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	4 cut(s)	235, 328, 721, 730
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	4 cut(s)	363, 384, 456, 899
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	60, 188, 936
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	900
Bse1I	ACTGG	4 cut(s)	54, 493, 638, 916
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	60, 188, 936
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	312, 846
BseNI	ACTGG	4 cut(s)	54, 493, 638, 916
BseSI	GKGCMC	2 cut(s)	187, 304
BseXI	GCAGC	4 cut(s)	144, 705, 760, 940
BseYI	CCCAGC	3 cut(s)	230, 287, 714
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	4 cut(s)	5, 59, 560, 935
BshNI	GGYRCC	3 cut(s)	184, 446, 977
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	42
BsiWI	CGTACG	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	900
BsnI	GGCC	4 cut(s)	5, 59, 560, 935
BsoBI	CYCGRG	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	187, 304
Bsp143I	GATC	4 cut(s)	408, 439, 582, 587
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	8 cut(s)	6, 213, 221, 248, 279, 596, 606, 672
BspANI	GGCC	4 cut(s)	5, 59, 560, 935
BspCNI	CTCAG	2 cut(s)	313, 845
BspFNI	CGCG	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	5 cut(s)	40, 186, 448, 841, 979
BspPI	GGATC	2 cut(s)	416, 582
BspT107I	GGYRCC	3 cut(s)	184, 446, 977
BsrBI	CCGCTC	1 cut(s)	598
BsrI	ACTGG	4 cut(s)	54, 493, 638, 916
BssECI	CCNNGG	3 cut(s)	60, 188, 936
BssMI	GATC	4 cut(s)	408, 439, 582, 587
BssNAI	GTATAC	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	188, 936
Bst1107I	GTATAC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	632
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	5 cut(s)	130, 195, 293, 327, 787
BstDEI	CTNAG	2 cut(s)	321, 832
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	608
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	411, 442, 585, 590
BstMBI	GATC	4 cut(s)	408, 439, 582, 587
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 227, 326, 782
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	2 cut(s)	187, 304
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	4 cut(s)	144, 705, 760, 940
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BstZ17I	GTATAC	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	5, 59, 560, 935
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	2 cut(s)	258, 707
BtsCI	GGATG	1 cut(s)	736
Cac8I	GCNNGC	5 cut(s)	130, 195, 293, 327, 787
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	57, 933
Csp6I	GTAC	3 cut(s)	610, 703, 978
CviAII	CATG	5 cut(s)	296, 619, 663, 727, 796
CviQI	GTAC	3 cut(s)	610, 703, 978
DdeI	CTNAG	2 cut(s)	321, 832
DpnI	GATC	4 cut(s)	410, 441, 584, 589
DpnII	GATC	4 cut(s)	408, 439, 582, 587
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
EciI	GGCGGA	2 cut(s)	236, 294
Eco130I	CCWWGG	2 cut(s)	188, 936
Eco147I	AGGCCT	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	188, 936
ErhI	CCWWGG	2 cut(s)	188, 936
FaeI	CATG	5 cut(s)	299, 622, 666, 730, 799
FatI	CATG	5 cut(s)	295, 618, 662, 726, 795
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	2 cut(s)	46, 309
Fnu4HI	GCNGC	5 cut(s)	6, 133, 719, 774, 954
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	5 cut(s)	6, 133, 719, 774, 954
FspBI	CTAG	2 cut(s)	189, 813
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	5 cut(s)	6, 133, 719, 774, 954
GsaI	CCCAGC	3 cut(s)	234, 291, 718
GsuI	CTGGAG	4 cut(s)	363, 384, 456, 899
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	5, 59, 560, 935
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	299, 622, 666, 730, 799
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	13, 345, 820
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	4 cut(s)	47, 302, 310, 928
Hpy188I	TCNGA	4 cut(s)	556, 582, 587, 835
Hpy188III	TCNNGA	4 cut(s)	349, 435, 796, 859
Hpy8I	GTNNAC	4 cut(s)	47, 302, 310, 928
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	316, 612
HpyCH4V	TGCA	8 cut(s)	89, 132, 271, 302, 477, 485, 534, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 227, 326, 782
HpyF3I	CTNAG	2 cut(s)	321, 832
HpySE526I	ACGT	2 cut(s)	316, 612
Hsp92II	CATG	5 cut(s)	299, 622, 666, 730, 799
HspAI	GCGC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	981
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	408, 439, 582, 587
LmnI	GCTCC	3 cut(s)	603, 802, 903
Lsp1109I	GCAGC	4 cut(s)	144, 705, 760, 940
LweI	GCATC	4 cut(s)	235, 328, 721, 730
MaeI	CTAG	2 cut(s)	189, 813
MaeII	ACGT	2 cut(s)	316, 612
MalI	GATC	4 cut(s)	410, 441, 584, 589
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	4 cut(s)	408, 439, 582, 587
MboII	GAAGA	2 cut(s)	619, 874
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	187, 304
MluCI	AATT	3 cut(s)	27, 251, 529
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	386
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	4 cut(s)	129, 227, 326, 782
NdeII	GATC	4 cut(s)	408, 439, 582, 587
NlaIII	CATG	5 cut(s)	299, 622, 666, 730, 799
NlaIV	GGNNCC	5 cut(s)	40, 186, 448, 841, 979
NspI	RCATGY	1 cut(s)	666
PaeR7I	CTCGAG	1 cut(s)	706
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	13, 820
Pfl23II	CGTACG	1 cut(s)	609
PkrI	GCNGC	5 cut(s)	7, 134, 720, 775, 955
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	3 cut(s)	230, 287, 714
PspGI	CCWGG	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	609
PspN4I	GGNNCC	5 cut(s)	40, 186, 448, 841, 979
PspPI	GGNCC	2 cut(s)	57, 933
PspXI	VCTCGAGB	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	718
RsaI	GTAC	3 cut(s)	611, 704, 979
RsaNI	GTAC	3 cut(s)	610, 703, 978
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	5 cut(s)	6, 133, 719, 774, 954
Sau3AI	GATC	4 cut(s)	408, 439, 582, 587
Sau96I	GGNCC	2 cut(s)	57, 933
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	187, 304
SfaNI	GCATC	4 cut(s)	235, 328, 721, 730
SfcI	CTRYAG	1 cut(s)	640
Sfr274I	CTCGAG	1 cut(s)	706
SlaI	CTCGAG	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	27, 251, 529
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	8 cut(s)	6, 213, 221, 248, 279, 596, 606, 672
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	189, 813
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	188, 936
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	319, 615
TaqI	TCGA	6 cut(s)	309, 400, 630, 693, 707, 737
TasI	AATT	3 cut(s)	27, 251, 529
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	13, 820
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	4 cut(s)	132, 718, 773, 953
TspGWI	ACGGA	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	666
XhoI	CTCGAG	1 cut(s)	706
XmaJI	CCTAGG	1 cut(s)	188
XmiI	GTMKAC	2 cut(s)	46, 309
XspI	CTAG	2 cut(s)	189, 813
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.