Rmu_sc0005878.1_g000010

Petal death protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005878.1
N/A
Physical Location & Seq
Reverse (-)
44279 .. 44686
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
atgcggataaaagcagcagttgatgctcggaaagagagtggctctgacattgtaattgtagcacgatctgatgctcgtcaagcagtgtctttggaagaagcactttggaggtcaagggcattcgctgatgctggagcagatgttcttttcattgatgcactagcctcaaaagaagaaatgaaggctttctgtggagtatatcccctagttccaaaaatggtacattacattttccatagcacaaaccacaaaagtagaaagcaacaagtatcccatgttgctgaagacttggatttattacatagctattctacattttcatgcccaagggcttttgcataccttacgcttattgcttctatacatgtagcttttggtaacctagacaagattgtaaaaaattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.08

Weight (kDa)

8.59

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEP_mutase PF13714 2 - 72 5.6e-13 Phosphoenolpyruvate phosphomutase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 364
AloI GAACNNNNNNTCC 2 cut(s) 126, 158
AluBI AGCT 2 cut(s) 306, 371
AluI AGCT 2 cut(s) 306, 371
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 26
BciVI GTATCC 1 cut(s) 280
BfaI CTAG 3 cut(s) 161, 206, 383
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 4 cut(s) 13, 61, 118, 145
BpiI GAAGAC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
BseDI CCNNGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 377
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 23, 80
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 291
BsuI GTATCC 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 221
CviAII CATG 3 cut(s) 275, 321, 365
CviJI RGCY 6 cut(s) 42, 164, 185, 306, 332, 371
CviKI_1 RGCY 6 cut(s) 42, 164, 185, 306, 332, 371
CviQI GTAC 1 cut(s) 221
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 377
EcoO65I GGTNACC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 3 cut(s) 278, 324, 368
FaiI YATR 8 cut(s) 199, 237, 276, 303, 322, 340, 362, 366
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 3 cut(s) 274, 320, 364
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 3 cut(s) 161, 206, 383
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 153
Hin1II CATG 3 cut(s) 278, 324, 368
Hpy188I TCNGA 3 cut(s) 30, 46, 70
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 158, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 80
Hsp92II CATG 3 cut(s) 278, 324, 368
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 4 cut(s) 13, 61, 118, 145
MaeI CTAG 3 cut(s) 161, 206, 383
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 3 cut(s) 107, 185, 296
MluCI AATT 2 cut(s) 54, 400
MnlI CCTC 2 cut(s) 102, 175
MroXI GAANNNNTTC 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 23, 80
NdeII GATC 1 cut(s) 65
NlaIII CATG 3 cut(s) 278, 324, 368
NspI RCATGY 1 cut(s) 368
PciI ACATGT 1 cut(s) 364
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 16
PscI ACATGT 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 377
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 319
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 65
SetI ASST 5 cut(s) 113, 308, 345, 373, 384
SfaNI GCATC 4 cut(s) 13, 61, 118, 145
SmiMI CAYNNNNRTG 1 cut(s) 319
Sse9I AATT 2 cut(s) 54, 400
SsiI CCGC 1 cut(s) 4
SspMI CTAG 3 cut(s) 161, 206, 383
StyI CCWWGG 1 cut(s) 326
TasI AATT 2 cut(s) 54, 400
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 139, 194, 309
TspRI CASTG 1 cut(s) 90
XceI RCATGY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 3 cut(s) 161, 206, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.