Rmu_sc0005887.1_g000009

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005887.1
N/A
Physical Location & Seq
Forward (+)
36400 .. 38335
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
atgtccgacgaggagcaccacttcgaatctaaggccgacgccggagcctccaagacctatcctcagcaggccggcaccatccgaaagaacgggcctgtttttgatgacaatgtaaccgttctttcggatggtgccggcctgctgaggataggtcttggaggctccggcgtcggccttagattcgaagtgtgccactttgttggtattgacatcttcactgccaagaagcttgaggatattgttccctcttcccacaattgtgatgttccccatgtcaaccgtaccgactaccagctgattgatatctctgaggacggatttgtgagtctgctgactgagaatggtaacaccaaggatgacctgaggcttccaaccgatgacaatctgcttacgcagatcaaggatggctttgctgaggggaaagacctggttgtgtctgtgatgtctgctatgggcgaggagcagatttgtgctctcaaggatatcggtccaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko05166 map04110 map04111 map05166
Pfam Domains
Protein Families
eIF-5a

Protein Analysis

165

Amino Acids

17.81

Weight (kDa)

4.6

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF5A-like_N PF21485 64 - 85 5.3e-07 Translation initiation factor 5A-like, N-terminal
eIF-5a PF01287 91 - 160 1.8e-29 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 74, 131
AcyI GRCGYC 2 cut(s) 39, 168
AfaI GTAC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 2 cut(s) 229, 295
AluI AGCT 2 cut(s) 229, 295
Alw21I GWGCWC 2 cut(s) 18, 475
AoxI GGCC 5 cut(s) 33, 69, 92, 136, 172
AspS9I GGNCC 2 cut(s) 92, 488
AsuII TTCGAA 2 cut(s) 24, 183
AvaII GGWCC 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 362
BanI GGYRCC 2 cut(s) 74, 131
Bbv12I GWGCWC 2 cut(s) 18, 475
BbvCI CCTCAGC 3 cut(s) 63, 143, 414
BccI CCATC 3 cut(s) 86, 122, 398
BciT130I CCWGG 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 92, 488
BmiI GGNNCC 4 cut(s) 46, 76, 133, 163
BmrFI CCNGG 1 cut(s) 428
Bpu10I CCTNAGC 3 cut(s) 63, 143, 414
Bpu14I TTCGAA 2 cut(s) 24, 183
BpuEI CTTGAG 2 cut(s) 251, 461
BsaBI GATNNNNATC 2 cut(s) 302, 381
BsaHI GRCGYC 2 cut(s) 39, 168
BsaJI CCNNGG 1 cut(s) 351
Bse118I RCCGGY 2 cut(s) 71, 134
Bse21I CCTNAGG 1 cut(s) 362
Bse8I GATNNNNATC 2 cut(s) 302, 381
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 4 cut(s) 78, 133, 361, 409
BseJI GATNNNNATC 2 cut(s) 302, 381
BseMII CTCAG 6 cut(s) 77, 134, 300, 327, 353, 405
BseRI GAGGAG 2 cut(s) 26, 473
BshFI GGCC 5 cut(s) 35, 71, 94, 138, 174
BshNI GGYRCC 2 cut(s) 74, 131
BsiHKAI GWGCWC 2 cut(s) 18, 475
BsiSI CCGG 4 cut(s) 42, 72, 135, 165
BsnI GGCC 5 cut(s) 35, 71, 94, 138, 174
Bsp119I TTCGAA 2 cut(s) 24, 183
Bsp1286I GDGCHC 2 cut(s) 18, 475
Bsp143I GATC 1 cut(s) 396
BspANI GGCC 5 cut(s) 35, 71, 94, 138, 174
BspCNI CTCAG 6 cut(s) 76, 135, 301, 328, 354, 406
BspLI GGNNCC 4 cut(s) 46, 76, 133, 163
BspT104I TTCGAA 2 cut(s) 24, 183
BspT107I GGYRCC 2 cut(s) 74, 131
BsrFI RCCGGY 2 cut(s) 71, 134
BssAI RCCGGY 2 cut(s) 71, 134
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 396
BssNI GRCGYC 2 cut(s) 39, 168
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 118, 281
Bst6I CTCTTC 1 cut(s) 253
BstACI GRCGYC 2 cut(s) 39, 168
BstBI TTCGAA 2 cut(s) 24, 183
BstC8I GCNNGC 4 cut(s) 69, 73, 136, 140
BstDEI CTNAG 8 cut(s) 30, 63, 143, 176, 309, 336, 362, 414
BstF5I GGATG 4 cut(s) 78, 133, 361, 409
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 362
BsuRI GGCC 5 cut(s) 35, 71, 94, 138, 174
BtsCI GGATG 4 cut(s) 78, 133, 361, 409
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 69, 73, 136, 140
Cfr10I RCCGGY 2 cut(s) 71, 134
Cfr13I GGNCC 2 cut(s) 92, 488
CseI GACGC 2 cut(s) 47, 157
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 8 cut(s) 30, 63, 143, 176, 309, 336, 362, 414
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 351
Eco32I GATATC 2 cut(s) 304, 484
Eco47I GGWCC 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 2 cut(s) 304, 484
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 1 cut(s) 275
FaiI YATR 2 cut(s) 273, 452
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 1 cut(s) 271
FokI GGATG 4 cut(s) 65, 140, 368, 416
HaeIII GGCC 5 cut(s) 35, 71, 94, 138, 174
HapII CCGG 4 cut(s) 42, 72, 135, 165
HgaI GACGC 2 cut(s) 47, 157
Hin1I GRCGYC 2 cut(s) 39, 168
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 26, 180, 325
HpaII CCGG 4 cut(s) 42, 72, 135, 165
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 7, 83, 127, 310
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 3 cut(s) 11, 41, 173
HpyCH4III ACNGT 2 cut(s) 118, 281
HpyF3I CTNAG 8 cut(s) 30, 63, 143, 176, 309, 336, 362, 414
Hsp92I GRCGYC 2 cut(s) 39, 168
Hsp92II CATG 1 cut(s) 275
KroI GCCGGC 2 cut(s) 71, 134
KroNI GCCGGC 2 cut(s) 73, 136
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 13, 44, 167, 460
MabI ACCWGGT 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 112, 344
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 2 cut(s) 205, 240
MfeI CAATTG 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 18, 475
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 2 cut(s) 30, 395
MroNI GCCGGC 2 cut(s) 71, 134
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 4 cut(s) 42, 72, 135, 165
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 428
NaeI GCCGGC 2 cut(s) 73, 136
NdeII GATC 1 cut(s) 396
NgoMIV GCCGGC 2 cut(s) 71, 134
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 4 cut(s) 46, 76, 133, 163
NspV TTCGAA 2 cut(s) 24, 183
OliI CACNNNNGTG 1 cut(s) 258
PdiI GCCGGC 2 cut(s) 73, 136
PfeI GAWTC 2 cut(s) 26, 180
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 4 cut(s) 46, 76, 133, 163
PspPI GGNCC 2 cut(s) 92, 488
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 258
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 2 cut(s) 92, 488
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 18, 475
SetI ASST 6 cut(s) 59, 154, 231, 297, 363, 429
SexAI ACCWGGT 1 cut(s) 426
SfuI TTCGAA 2 cut(s) 24, 183
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 230, 476
SmoI CTYRAG 2 cut(s) 230, 476
Sse9I AATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 118, 281
TaqI TCGA 2 cut(s) 24, 183
TaqII GACCGA 1 cut(s) 476
TasI AATT 1 cut(s) 256
TfiI GAWTC 2 cut(s) 26, 180
TscAI CASTG 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.