Rmu_sc0005919.1_g000008

Folate-sensitive fragile site protein Fra10Ac1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005919.1
N/A
Physical Location & Seq
Forward (+)
41410 .. 48941
7532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atggcctcgtttgcgtcgttaaaatctgcaatcttcgacagagaagagcgaaaacagcagtaccaggatcacattcgcggcctcaacgcttacgaacgccacaagaagtttgtcaaagattacgttagctattatggtagagagggatcttcacacgtgaatttgcctgtcaaaactgatcaagacaccctaagagaagggtaccggtttataagatctgaggaagatgacatggacacatcttgggagcagaggctggtgaagcgatactatgacaagctgtttaaagaatattgcatagctgatatgtcacattacaagagtggtaagattggtcttaggtggaggacagaaaaggaagtcgtatccggtaaagggcagttcatatgtggtagcaaacattgtgatctaaaagatggcttagccagctacgaggtgaacttctcttattatgaagctggagaaaacaaacaagcgctggtcaaattggtaacttgtgagagatgttcggaaaagcttcattacaaacgacggaaagagaaggaacacatggaaaaagaaaagaacgaagataagagaagaaagaggaaccggtcaagggatagtgatgacactgatgatgagggaagcaaggagaggagaaaagggaaaaaggcttcactttccactagtgaacagagagtcaatgatgaagatgataatgaaaactttgacgatactccatattttcaggcacacagtgttgacgctgttgaccttgacgaaaggattggcggcgcacttcatcgtcgatttcagatctttgacaggcgaggctttcaagaagactatgtacgtccttcattttggaggacgaaattgaaattgaaattgggattgagattgggttctttggaaacttcgacagtactcaaagcgggacttgagattgaggaaggaggagggcggagagatcatctatatcattacttgctgttgttttgcaatccaagtcttcgtgctttctttgttggacttggaggtgttgaagaggccatcgacctcgcggcggaagctgataaggcagcgagtcttctcctagatccaatgctcagcccgcttcttcggggcgcggacctcatggtcctcgccgcagctgctggtgttgccaccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fra10Ac1

Protein Analysis

385

Amino Acids

44.53

Weight (kDa)

7.63

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fra10Ac1 PF09725 59 - 175 3.5e-50 Folate-sensitive fragile site protein Fra10Ac1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AasI GACNNNNNNGTC 1 cut(s) 1121
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccII CGCG 3 cut(s) 78, 1046, 1112
AciI CCGC 9 cut(s) 78, 774, 917, 946, 1046, 1049, 1097, 1112, 1131
AclWI GGATC 3 cut(s) 75, 154, 1076
AcsI RAATTY 1 cut(s) 160
AcvI CACGTG 1 cut(s) 157
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 4 cut(s) 62, 203, 834, 909
AfeI AGCGCT 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 375, 598, 1048
AflIII ACRYGT 1 cut(s) 154
AgeI ACCGGT 2 cut(s) 204, 591
AgsI TTSAA 4 cut(s) 821, 862, 868, 1028
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AluBI AGCT 8 cut(s) 129, 280, 302, 429, 458, 517, 1055, 1136
AluI AGCT 8 cut(s) 129, 280, 302, 429, 458, 517, 1055, 1136
AlwI GGATC 3 cut(s) 75, 154, 1076
AlwNI CAGNNNCTG 2 cut(s) 256, 1139
Aor51HI AGCGCT 1 cut(s) 477
AoxI GGCC 3 cut(s) 3, 79, 1032
ApeKI GCWGC 3 cut(s) 1064, 1133, 1136
ApoI RAATTY 1 cut(s) 160
AsiGI ACCGGT 2 cut(s) 204, 591
Asp700I GAANNNNTTC 1 cut(s) 516
Asp718I GGTACC 1 cut(s) 201
AspLEI GCGC 3 cut(s) 478, 779, 1112
AspS9I GGNCC 2 cut(s) 1114, 1123
AsuHPI GGTGA 2 cut(s) 271, 448
AvaII GGWCC 2 cut(s) 1114, 1123
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanI GGYRCC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 3 cut(s) 831, 986, 1064
BbvI GCAGC 3 cut(s) 1076, 1123, 1145
BccI CCATC 2 cut(s) 410, 1043
BciT130I CCWGG 1 cut(s) 65
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 178
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 2 cut(s) 669, 1079
BfoI RGCGCY 1 cut(s) 479
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 2 cut(s) 215, 798
BisI GCNGC 7 cut(s) 79, 775, 1047, 1065, 1131, 1134, 1137
BlpI GCTNAGC 2 cut(s) 421, 1091
BlsI GCNGC 7 cut(s) 80, 776, 1048, 1066, 1132, 1135, 1138
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 1114, 1123
BmgT120I GGNCC 2 cut(s) 1114, 1123
BmiI GGNNCC 2 cut(s) 203, 590
BmrFI CCNGG 1 cut(s) 65
BpiI GAAGAC 3 cut(s) 831, 986, 1064
BpmI CTGGAG 1 cut(s) 480
Bpu1102I GCTNAGC 2 cut(s) 421, 1091
BpuEI CTTGAG 1 cut(s) 944
BsaAI YACGTR 1 cut(s) 157
BsaWI WCCGGW 3 cut(s) 204, 368, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 598, 1048
Bse118I RCCGGY 2 cut(s) 204, 591
BseBI CCWGG 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 375, 598, 1048
BseMII CTCAG 2 cut(s) 210, 1105
BseRI GAGGAG 2 cut(s) 652, 954
BseXI GCAGC 3 cut(s) 1076, 1123, 1145
Bsh1236I CGCG 3 cut(s) 78, 1046, 1112
BshFI GGCC 3 cut(s) 5, 81, 1034
BshNI GGYRCC 1 cut(s) 201
BshTI ACCGGT 2 cut(s) 204, 591
BsiSI CCGG 3 cut(s) 205, 369, 592
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 3 cut(s) 375, 598, 1048
BsmFI GGGAC 1 cut(s) 933
BsnI GGCC 3 cut(s) 5, 81, 1034
Bsp143I GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
Bsp1720I GCTNAGC 2 cut(s) 421, 1091
BspACI CCGC 9 cut(s) 78, 774, 917, 946, 1046, 1049, 1097, 1112, 1131
BspANI GGCC 3 cut(s) 5, 81, 1034
BspCNI CTCAG 2 cut(s) 211, 1104
BspFNI CGCG 3 cut(s) 78, 1046, 1112
BspLI GGNNCC 2 cut(s) 203, 590
BspPI GGATC 3 cut(s) 75, 154, 1076
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 201
BsrFI RCCGGY 2 cut(s) 204, 591
BssAI RCCGGY 2 cut(s) 204, 591
BssMI GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 740, 907
Bst6I CTCTTC 2 cut(s) 39, 1023
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 427, 1097
BstDEI CTNAG 5 cut(s) 191, 219, 338, 421, 1091
BstFNI CGCG 3 cut(s) 78, 1046, 1112
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 3 cut(s) 478, 779, 1112
BstKTI GATC 8 cut(s) 70, 149, 181, 218, 409, 801, 955, 1084
BstMBI GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
BstMWI GCNNNNNNNGC 9 cut(s) 11, 55, 262, 426, 1052, 1061, 1096, 1136, 1145
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 3 cut(s) 78, 1046, 1112
BstV1I GCAGC 3 cut(s) 1076, 1123, 1145
BstV2I GAAGAC 3 cut(s) 831, 986, 1064
BstX2I RGATCY 4 cut(s) 146, 215, 798, 1081
BstYI RGATCY 4 cut(s) 146, 215, 798, 1081
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 5, 81, 1034
BtsIMutI CAGTG 2 cut(s) 612, 745
Cac8I GCNNGC 2 cut(s) 427, 1097
CaiI CAGNNNCTG 2 cut(s) 256, 1139
CfoI GCGC 3 cut(s) 478, 779, 1112
Cfr10I RCCGGY 2 cut(s) 204, 591
Cfr13I GGNCC 2 cut(s) 1114, 1123
CseI GACGC 2 cut(s) 3, 755
Csp6I GTAC 4 cut(s) 61, 202, 833, 908
CspAI ACCGGT 2 cut(s) 204, 591
CviAII CATG 3 cut(s) 232, 550, 1120
CviQI GTAC 4 cut(s) 61, 202, 833, 908
DdeI CTNAG 5 cut(s) 191, 219, 338, 421, 1091
DpnI GATC 8 cut(s) 69, 148, 180, 217, 408, 800, 954, 1083
DpnII GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
DraI TTTAAA 1 cut(s) 286
DraIII CACNNNGTG 1 cut(s) 740
DrdI GACNNNNNNGTC 1 cut(s) 1121
DseDI GACNNNNNNGTC 1 cut(s) 1121
Eam1104I CTCTTC 2 cut(s) 39, 1023
EarI CTCTTC 2 cut(s) 39, 1023
EciI GGCGGA 2 cut(s) 961, 1064
Eco47I GGWCC 2 cut(s) 1114, 1123
Eco47III AGCGCT 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 235, 553, 1123
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 1 cut(s) 933
FatI CATG 3 cut(s) 231, 549, 1119
FauI CCCGC 2 cut(s) 910, 1104
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 7 cut(s) 79, 775, 1047, 1065, 1131, 1134, 1137
Fsp4HI GCNGC 7 cut(s) 79, 775, 1047, 1065, 1131, 1134, 1137
FspBI CTAG 2 cut(s) 669, 1079
GlaI GCGC 3 cut(s) 477, 778, 1111
GluI GCNGC 7 cut(s) 79, 775, 1047, 1065, 1131, 1134, 1137
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 3 cut(s) 5, 81, 1034
HapII CCGG 3 cut(s) 205, 369, 592
HgaI GACGC 2 cut(s) 3, 755
HhaI GCGC 3 cut(s) 478, 779, 1112
Hin1II CATG 3 cut(s) 235, 553, 1123
Hin6I GCGC 3 cut(s) 476, 777, 1110
HinP1I GCGC 3 cut(s) 476, 777, 1110
HincII GTYRAC 2 cut(s) 745, 754
HindII GTYRAC 2 cut(s) 745, 754
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 2 cut(s) 681, 1069
HpaII CCGG 3 cut(s) 205, 369, 592
HphI GGTGA 2 cut(s) 271, 448
Hpy166II GTNNAC 4 cut(s) 439, 674, 745, 754
Hpy188I TCNGA 3 cut(s) 220, 511, 798
Hpy188III TCNNGA 2 cut(s) 182, 821
Hpy8I GTNNAC 4 cut(s) 439, 674, 745, 754
Hpy99I CGWCG 3 cut(s) 19, 534, 792
HpyAV CCTTC 4 cut(s) 191, 535, 849, 929
HpyCH4III ACNGT 2 cut(s) 740, 907
HpyCH4IV ACGT 3 cut(s) 123, 156, 835
HpyCH4V TGCA 3 cut(s) 29, 297, 984
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 55, 262, 426, 1052, 1061, 1096, 1136, 1145
HpyF3I CTNAG 5 cut(s) 191, 219, 338, 421, 1091
HpySE526I ACGT 3 cut(s) 123, 156, 835
Hsp92II CATG 3 cut(s) 235, 553, 1123
HspAI GCGC 3 cut(s) 476, 777, 1110
KpnI GGTACC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 1076, 1123, 1145
MaeI CTAG 2 cut(s) 669, 1079
MaeII ACGT 3 cut(s) 123, 156, 835
MaeIII GTNAC 2 cut(s) 309, 490
MalI GATC 8 cut(s) 69, 148, 180, 217, 408, 800, 954, 1083
MboI GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
MflI RGATCY 4 cut(s) 146, 215, 798, 1081
MluCI AATT 6 cut(s) 160, 485, 857, 863, 869, 1153
MlyI GAGTC 2 cut(s) 690, 1078
MmeI TCCRAC 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 20, 285, 1156
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 3 cut(s) 205, 369, 592
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 3 cut(s) 78, 1046, 1112
MwoI GCNNNNNNNGC 9 cut(s) 11, 55, 262, 426, 1052, 1061, 1096, 1136, 1145
NdeI CATATG 1 cut(s) 386
NdeII GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
NlaIII CATG 3 cut(s) 235, 553, 1123
NlaIV GGNNCC 2 cut(s) 203, 590
NmuCI GTSAC 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 516
PinAI ACCGGT 2 cut(s) 204, 591
PkrI GCNGC 7 cut(s) 80, 776, 1048, 1066, 1132, 1135, 1138
PleI GAGTC 2 cut(s) 689, 1077
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 2 cut(s) 689, 1077
Ppu21I YACGTR 1 cut(s) 157
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 63
PspCI CACGTG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 203, 590
PspPI GGNCC 2 cut(s) 1114, 1123
PstNI CAGNNNCTG 2 cut(s) 256, 1139
PsuI RGATCY 4 cut(s) 146, 215, 798, 1081
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 4 cut(s) 62, 203, 834, 909
RsaNI GTAC 4 cut(s) 61, 202, 833, 908
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 20, 285, 1156
SatI GCNGC 7 cut(s) 79, 775, 1047, 1065, 1131, 1134, 1137
Sau3AI GATC 8 cut(s) 67, 146, 178, 215, 406, 798, 952, 1081
Sau96I GGNCC 2 cut(s) 1114, 1123
ScaI AGTACT 1 cut(s) 909
SchI GAGTC 2 cut(s) 690, 1078
ScrFI CCNGG 1 cut(s) 65
SinI GGWCC 2 cut(s) 1114, 1123
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 6 cut(s) 160, 485, 857, 863, 869, 1153
SsiI CCGC 9 cut(s) 78, 774, 917, 946, 1046, 1049, 1097, 1112, 1131
SspI AATATT 1 cut(s) 293
SspMI CTAG 2 cut(s) 669, 1079
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 740, 907
TaiI ACGT 3 cut(s) 126, 159, 838
TaqI TCGA 4 cut(s) 36, 790, 902, 1038
TasI AATT 6 cut(s) 160, 485, 857, 863, 869, 1153
TatI WGTACW 1 cut(s) 907
TauI GCSGC 4 cut(s) 81, 777, 1049, 1133
Tru1I TTAA 3 cut(s) 20, 285, 1156
Tru9I TTAA 3 cut(s) 20, 285, 1156
TscAI CASTG 2 cut(s) 619, 745
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 3 cut(s) 1064, 1133, 1136
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 7 cut(s) 373, 468, 509, 705, 717, 773, 831
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 2 cut(s) 619, 745
VpaK11BI GGWCC 2 cut(s) 1114, 1123
XapI RAATTY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 669, 1079
ZrmI AGTACT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.