Rmu_sc0005921.1_g000009
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005921.1
N/A
Physical Location & Seq
Forward (+)
31678 .. 33213
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 515 bp
atgcccatgatgttcgttcctcatggagtctttgacagacgaccaccttccttcccgccgaaactggtgggtccctcccgtccgccacttgccataaactatattttcttctcaaatcacgacgatccagttcctcgaaatgtgaaacttctcgagttctctcgtctatcccctaccaacagtgatccgatgtgggtggctaccgtacctcaccgtcaccgaccccttcctccggttccgacgatcctcaccgctcgtccgaatcccaagctcttctatcattctcttcccaaaccagcctcgtttcgtttcggtctccgcctccgcctcaacagctacaaagcttcggccgcaaagaagcaggtgccggaggtagctactcgaaaatcagatagtgagaaatttcggtcacaagaggaaaagaatggtgaaggtttggatttgggatggttgcctgcttttcctcacgtgtttattgcctccatgtccaattttcttttcggttatcacatagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

172

Amino Acids

19.54

Weight (kDa)

10.36

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 364
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 6 cut(s) 56, 83, 252, 319, 325, 351
AclWI GGATC 3 cut(s) 119, 179, 238
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 401
AcvI CACGTG 1 cut(s) 469
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 468
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 4 cut(s) 271, 336, 344, 377
AluI AGCT 4 cut(s) 271, 336, 344, 377
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 3 cut(s) 119, 179, 238
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 203, 209, 241, 440
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 469
BccI CCATC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 4 cut(s) 72, 73, 237, 366
BsaAI YACGTR 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 69, 128
BseGI GGATG 1 cut(s) 452
BseLI CCNNNNNNNGG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 69, 128
BseX3I CGGCCG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 233, 368
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 3 cut(s) 124, 184, 243
BspACI CCGC 6 cut(s) 56, 83, 252, 319, 325, 351
BspANI GGCC 1 cut(s) 350
BspLI GGNNCC 4 cut(s) 72, 73, 237, 366
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 3 cut(s) 119, 179, 238
BspQI GCTCTTC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 69, 128
BssMI GATC 3 cut(s) 124, 184, 243
Bst4CI ACNGT 3 cut(s) 182, 205, 215
Bst6I CTCTTC 2 cut(s) 278, 291
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 456
BstF5I GGATG 1 cut(s) 452
BstKTI GATC 3 cut(s) 127, 187, 246
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 124, 184, 243
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 333, 350
BstZI CGGCCG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 7, 23, 484
CviJI RGCY 7 cut(s) 200, 271, 299, 336, 344, 350, 377
CviKI_1 RGCY 7 cut(s) 200, 271, 299, 336, 344, 350, 377
CviQI GTAC 1 cut(s) 206
DpnI GATC 3 cut(s) 126, 186, 245
DpnII GATC 3 cut(s) 124, 184, 243
EaeI YGGCCR 1 cut(s) 348
EagI CGGCCG 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 278, 291
EarI CTCTTC 2 cut(s) 278, 291
EciI GGCGGA 3 cut(s) 72, 308, 314
EclXI CGGCCG 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 71
FaeI CATG 3 cut(s) 10, 26, 487
FaiI YATR 6 cut(s) 8, 24, 95, 102, 485, 512
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 6, 22, 483
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 233, 368
Hin1II CATG 3 cut(s) 10, 26, 487
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 2 cut(s) 27, 262
HpaII CCGG 2 cut(s) 233, 368
HphI GGTGA 4 cut(s) 203, 209, 241, 440
Hpy188I TCNGA 4 cut(s) 189, 240, 261, 391
Hpy188III TCNNGA 2 cut(s) 119, 152
Hpy99I CGWCG 2 cut(s) 125, 244
HpyAV CCTTC 4 cut(s) 57, 61, 236, 425
HpyCH4III ACNGT 3 cut(s) 182, 205, 215
HpyCH4IV ACGT 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 350
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 3 cut(s) 10, 26, 487
KflI GGGWCCC 1 cut(s) 71
Kzo9I GATC 3 cut(s) 124, 184, 243
LguI GCTCTTC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 50, 141, 246, 309, 347, 381, 468
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 215, 408
MalI GATC 3 cut(s) 126, 186, 245
MbiI CCGCTC 1 cut(s) 254
MboI GATC 3 cut(s) 124, 184, 243
MboII GAAGA 3 cut(s) 100, 265, 278
MluCI AATT 2 cut(s) 401, 490
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 263
MspI CCGG 2 cut(s) 233, 368
MwoI GCNNNNNNNGC 2 cut(s) 333, 350
NdeII GATC 3 cut(s) 124, 184, 243
NlaIII CATG 3 cut(s) 10, 26, 487
NlaIV GGNNCC 4 cut(s) 72, 73, 237, 366
NmuCI GTSAC 2 cut(s) 215, 408
PaeR7I CTCGAG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 35
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 1 cut(s) 35
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspCI CACGTG 1 cut(s) 469
PspN4I GGNNCC 4 cut(s) 72, 73, 237, 366
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 278
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 3 cut(s) 124, 184, 243
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 36
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 401, 490
SsiI CCGC 6 cut(s) 56, 83, 252, 319, 325, 351
TaaI ACNGT 3 cut(s) 182, 205, 215
TaiI ACGT 1 cut(s) 471
TaqI TCGA 3 cut(s) 136, 153, 382
TaqII GACCGA 2 cut(s) 302, 396
TasI AATT 2 cut(s) 401, 490
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 215, 408
Tsp45I GTSAC 2 cut(s) 215, 408
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.