Rmu_sc0005929.1_g000007

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005929.1
OG0030203
Physical Location & Seq
Forward (+)
13116 .. 13997
882 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
atgaaacaaacactaatgaagttaccgagttctttagcagtcgttctcttcattctctcaaccctttggctctcaactacttcaaatcccattctcgaaaacttcctcaaatgccttccagaacaaactcactccaactactccatctctgaagccatttacaccagccaaaatgccacttttgaatccgttctgctgtcatacatcagaaacggcagatatttaacccctacaactccgaaaccattggctattgtaacagccaagcatgaatcccacgtgcaagcaactgtgatctgtgcaaagcggcatggcttgcagattagaatccgaagtggaggccacgattatgagtgtctatcttacgtgtcacatgtcccctttgttattcttgacatgtttcatctccgcgccattaatgttgcgatgtcgcggatgagagtgcttgggttgagtctgtggctattgttggtgaactttactatgaaatcgcaaagaacagtaaagtttatgggttttcagctgcagctggtccaactgtcggtgttggtggtcactttagtggcggtggttcttgatagaaagtctatgggagaagatcttttttgggccattagaggtggtggtggagcaagctttggagtcattttgtcatggaaagtaaagctgcttccagtgccagccaaagtgactgtattcaacatcggaagcacccttgagcaaggcgctacagatgttctttaccggtggcaacacgttgttagaatcaaatggacttgtcacatattattataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

264

Amino Acids

29.7

Weight (kDa)

9.86

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 82 - 139 3e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0017961
rosa_multiflora Rmu_sc0005929.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 793
AccII CGCG 2 cut(s) 411, 433
AciI CCGC 4 cut(s) 307, 409, 433, 566
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 4 cut(s) 366, 373, 396, 754
AgeI ACCGGT 1 cut(s) 744
AgsI TTSAA 3 cut(s) 84, 185, 700
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 4 cut(s) 523, 529, 636, 667
AluI AGCT 4 cut(s) 523, 529, 636, 667
AoxI GGCC 2 cut(s) 340, 609
ApeKI GCWGC 3 cut(s) 523, 526, 667
AseI ATTAAT 1 cut(s) 417
AsiGI ACCGGT 1 cut(s) 744
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 413, 728
AspS9I GGNCC 2 cut(s) 532, 609
AsuHPI GGTGA 1 cut(s) 484
AvaII GGWCC 1 cut(s) 532
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbrPI CACGTG 1 cut(s) 280
BbvI GCAGC 3 cut(s) 510, 538, 654
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 229
BfmI CTRYAG 2 cut(s) 524, 729
BfoI RGCGCY 1 cut(s) 729
BglII AGATCT 1 cut(s) 598
BisI GCNGC 4 cut(s) 308, 524, 527, 668
BlsI GCNGC 4 cut(s) 309, 525, 528, 669
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 532, 609
BpuEI CTTGAG 1 cut(s) 737
BsaAI YACGTR 2 cut(s) 280, 367
BsaBI GATNNNNATC 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 744
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 1 cut(s) 674
Bse8I GATNNNNATC 1 cut(s) 326
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 541
BseNI ACTGG 1 cut(s) 674
BseXI GCAGC 3 cut(s) 510, 538, 654
Bsh1236I CGCG 2 cut(s) 411, 433
BshFI GGCC 2 cut(s) 342, 611
BshTI ACCGGT 1 cut(s) 744
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 342, 611
Bsp143I GATC 2 cut(s) 294, 598
BspACI CCGC 4 cut(s) 307, 409, 433, 566
BspANI GGCC 2 cut(s) 342, 611
BspFNI CGCG 2 cut(s) 411, 433
BspMAI CTGCAG 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 744
BsrI ACTGG 1 cut(s) 674
BssAI RCCGGY 1 cut(s) 744
BssMI GATC 2 cut(s) 294, 598
Bst4CI ACNGT 4 cut(s) 292, 502, 540, 694
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 316
BstBAI YACGTR 2 cut(s) 280, 367
BstC8I GCNNGC 4 cut(s) 285, 317, 634, 681
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 2 cut(s) 411, 433
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 2 cut(s) 413, 728
BstKTI GATC 2 cut(s) 297, 601
BstMBI GATC 2 cut(s) 294, 598
BstMWI GCNNNNNNNGC 2 cut(s) 316, 676
BstNSI RCATGY 2 cut(s) 377, 400
BstSFI CTRYAG 2 cut(s) 524, 729
BstUI CGCG 2 cut(s) 411, 433
BstV1I GCAGC 3 cut(s) 510, 538, 654
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 2 cut(s) 342, 611
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 4 cut(s) 285, 317, 634, 681
CfoI GCGC 2 cut(s) 413, 728
Cfr10I RCCGGY 1 cut(s) 744
Cfr13I GGNCC 2 cut(s) 532, 609
CspAI ACCGGT 1 cut(s) 744
CviAII CATG 5 cut(s) 269, 311, 374, 397, 654
DpnI GATC 2 cut(s) 296, 600
DpnII GATC 2 cut(s) 294, 598
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 280
FaeI CATG 5 cut(s) 272, 314, 377, 400, 657
FaqI GGGAC 1 cut(s) 362
FatI CATG 5 cut(s) 268, 310, 373, 396, 653
Fnu4HI GCNGC 4 cut(s) 308, 524, 527, 668
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 4 cut(s) 308, 524, 527, 668
GlaI GCGC 2 cut(s) 412, 727
GluI GCNGC 4 cut(s) 308, 524, 527, 668
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 2 cut(s) 342, 611
HapII CCGG 1 cut(s) 745
HhaI GCGC 2 cut(s) 413, 728
Hin1II CATG 5 cut(s) 272, 314, 377, 400, 657
Hin6I GCGC 2 cut(s) 411, 726
HinP1I GCGC 2 cut(s) 411, 726
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 6 cut(s) 185, 272, 327, 454, 642, 765
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 5 cut(s) 151, 209, 240, 332, 707
Hpy188III TCNNGA 4 cut(s) 95, 119, 392, 575
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 4 cut(s) 292, 502, 540, 694
HpyCH4IV ACGT 3 cut(s) 279, 366, 756
HpyCH4V TGCA 4 cut(s) 283, 302, 319, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 676
HpySE526I ACGT 3 cut(s) 279, 366, 756
Hsp92II CATG 5 cut(s) 272, 314, 377, 400, 657
HspAI GCGC 2 cut(s) 411, 726
Kzo9I GATC 2 cut(s) 294, 598
LmnI GCTCC 1 cut(s) 629
LpnPI CCDG 6 cut(s) 132, 178, 515, 687, 693, 758
Lsp1109I GCAGC 3 cut(s) 510, 538, 654
MaeII ACGT 3 cut(s) 279, 366, 756
MaeIII GTNAC 6 cut(s) 21, 256, 369, 553, 688, 779
MalI GATC 2 cut(s) 296, 600
MboI GATC 2 cut(s) 294, 598
MboII GAAGA 2 cut(s) 40, 608
MflI RGATCY 1 cut(s) 598
MlyI GAGTC 2 cut(s) 463, 651
MmeI TCCRAC 2 cut(s) 159, 559
MnlI CCTC 3 cut(s) 116, 332, 611
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 224, 417
MslI CAYNNNNRTG 2 cut(s) 348, 560
MspA1I CMGCKG 2 cut(s) 523, 529
MspI CCGG 1 cut(s) 745
MvnI CGCG 2 cut(s) 411, 433
MwoI GCNNNNNNNGC 2 cut(s) 316, 676
NdeII GATC 2 cut(s) 294, 598
NlaIII CATG 5 cut(s) 272, 314, 377, 400, 657
NmuCI GTSAC 4 cut(s) 369, 553, 688, 779
NspI RCATGY 2 cut(s) 377, 400
OliI CACNNNNGTG 1 cut(s) 560
PciI ACATGT 2 cut(s) 373, 396
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 185, 272, 327, 765
PinAI ACCGGT 1 cut(s) 744
PkrI GCNGC 4 cut(s) 309, 525, 528, 669
PleI GAGTC 2 cut(s) 462, 650
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
PpsI GAGTC 2 cut(s) 462, 650
Ppu21I YACGTR 2 cut(s) 280, 367
PscI ACATGT 2 cut(s) 373, 396
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 793
PspCI CACGTG 1 cut(s) 280
PspPI GGNCC 2 cut(s) 532, 609
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 598
PvuII CAGCTG 2 cut(s) 523, 529
RseI CAYNNNNRTG 2 cut(s) 348, 560
SaqAI TTAA 2 cut(s) 224, 417
SatI GCNGC 4 cut(s) 308, 524, 527, 668
Sau3AI GATC 2 cut(s) 294, 598
Sau96I GGNCC 2 cut(s) 532, 609
SchI GAGTC 2 cut(s) 463, 651
SetI ASST 8 cut(s) 282, 369, 525, 531, 622, 638, 669, 759
SfcI CTRYAG 2 cut(s) 524, 729
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 348, 560
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SsiI CCGC 4 cut(s) 307, 409, 433, 566
TaaI ACNGT 4 cut(s) 292, 502, 540, 694
TaiI ACGT 3 cut(s) 282, 369, 759
TaqI TCGA 1 cut(s) 96
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 4 cut(s) 185, 272, 327, 765
Tru1I TTAA 2 cut(s) 224, 417
Tru9I TTAA 2 cut(s) 224, 417
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 4 cut(s) 369, 553, 688, 779
TseI GCWGC 3 cut(s) 523, 526, 667
Tsp45I GTSAC 4 cut(s) 369, 553, 688, 779
TspDTI ATGAA 6 cut(s) 17, 32, 40, 285, 392, 500
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 532
VspI ATTAAT 1 cut(s) 417
XceI RCATGY 2 cut(s) 377, 400
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.