Rmu_sc0005947.1_g000042

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005947.1
N/A
Physical Location & Seq
Reverse (-)
201607 .. 201924
318 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
atgacagtgttaacagctttagatgagaagaagggcattgaagcggttgaagcattaaaagactccggcctctctgaccttgttgtttatcatcagcttgatgtaatagaccctgctagcattgcttcccttgcagattttgtcaaaacccgatttgggaaactagatatcttggcgtgccagcaccgcggggtgcagtcgttggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.41

Weight (kDa)

5.07

Isoelectric Point (pI)

26.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 44, 187, 189
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 41, 50
AluBI AGCT 2 cut(s) 17, 97
AluI AGCT 2 cut(s) 17, 97
AoxI GGCC 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 164
BmtI GCTAGC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 1 cut(s) 69
BspACI CCGC 3 cut(s) 44, 187, 189
BspANI GGCC 1 cut(s) 69
BspFNI CGCG 1 cut(s) 189
BspOI GCTAGC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 118, 178, 182
BstDSI CCRYGG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 50, 122, 131, 186
BstUI CGCG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 118, 178, 182
Cfr42I CCGCGG 1 cut(s) 190
CviJI RGCY 3 cut(s) 17, 69, 97
CviKI_1 RGCY 3 cut(s) 17, 69, 97
Eco32I GATATC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 169
FauI CCCGC 1 cut(s) 182
FspBI CTAG 2 cut(s) 117, 164
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 66
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 62
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 134, 196
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 122, 131, 186
KspAI GTTAAC 1 cut(s) 12
KspI CCGCGG 1 cut(s) 190
LpnPI CCDG 3 cut(s) 79, 126, 194
MaeI CTAG 2 cut(s) 117, 164
MboII GAAGA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 1 cut(s) 80
MseI TTAA 2 cut(s) 11, 56
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 50, 122, 131, 186
NheI GCTAGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
SacII CCGCGG 1 cut(s) 190
SaqAI TTAA 2 cut(s) 11, 56
SchI GAGTC 1 cut(s) 56
SetI ASST 3 cut(s) 19, 81, 99
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SsiI CCGC 3 cut(s) 44, 187, 189
SspMI CTAG 2 cut(s) 117, 164
TaaI ACNGT 1 cut(s) 7
Tru1I TTAA 2 cut(s) 11, 56
Tru9I TTAA 2 cut(s) 11, 56
TscAI CASTG 1 cut(s) 12
TspRI CASTG 1 cut(s) 12
XspI CTAG 2 cut(s) 117, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.