Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005968.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3054 .. 3773

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggaatcaagagacatcaaacccacaaaagaaatttacatggcattgcttcaatcatttgcccaacttggtgatgtgaagggagcagaacgaattgtcaacactatgatattggcaggttttcagccaactttagaatcttgttcagtgcttgttgaggcatatggaaaagctggtgaccctgatcaggcaaggcacaactttgattacataataaaagttgggcacaaacctgacgacaagtgcactgcgaccatgattgcagcttatgaaaagaagaatttacttgataaggcactggatttgttgttgcagcttgaaaaggatggctttgagccgggagttgctacttacacagttcttgtagattggctgggaaaactggagctagttagtgaggctgaacagctattggacaaaattgctgagctgggtgaggctcctccattgcaacttcatgtaagcatttgcgatatgtatgctagggctggatttgagaaaaaggcactacaagctttgggagttttggaggctaagaaggagcaactgagtttagatgactttgagacaattatcaaggggcttatggctggtggattttttcaggatgctcagaggatacggggagtgatggaggctcagggttttgttgcgtcacagcaacttcagttgcacctagtggctaaaagtattaacctcaagaggccatcaatgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

239

Amino Acids

26.46

Weight (kDa)

5.35

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	85 - 126	7.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	33, 280
AcuI	CTGAAG	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	679
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	53, 320
AluBI	AGCT	7 cut(s)	173, 266, 316, 388, 409, 430, 515
AluI	AGCT	7 cut(s)	173, 266, 316, 388, 409, 430, 515
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	6, 560
Alw44I	GTGCAC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	704
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	263, 313
ApoI	RAATTY	2 cut(s)	33, 280
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	3 cut(s)	83, 188, 446
BaeGI	GKGCMC	2 cut(s)	228, 248
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	275, 325
BccI	CCATC	3 cut(s)	320, 625, 715
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	6, 560
BfaI	CTAG	3 cut(s)	389, 483, 677
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	2 cut(s)	264, 314
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	2 cut(s)	265, 315
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	303, 387
Bse3DI	GCAATG	2 cut(s)	44, 446
BseGI	GGATG	2 cut(s)	331, 613
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	2 cut(s)	44, 446
BseMII	CTCAG	4 cut(s)	417, 539, 626, 653
BseNI	ACTGG	2 cut(s)	303, 387
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	2 cut(s)	228, 248
BseXI	GCAGC	2 cut(s)	275, 325
BseYI	CCCAGC	2 cut(s)	373, 430
BshFI	GGCC	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	6, 560
BsnI	GGCC	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	228, 248
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	4 cut(s)	418, 540, 625, 652
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	44, 446
BsrI	ACTGG	2 cut(s)	303, 387
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	426, 534, 548, 612, 639
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	331, 613
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	6, 560
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	337
BstSLI	GKGCMC	2 cut(s)	228, 248
BstV1I	GCAGC	2 cut(s)	275, 325
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	331, 613
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	153, 246, 296
BveI	ACCTGC	1 cut(s)	107
CseI	GACGC	1 cut(s)	642
CviAII	CATG	3 cut(s)	40, 256, 458
DdeI	CTNAG	5 cut(s)	426, 534, 548, 612, 639
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	650
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
FaeI	CATG	3 cut(s)	43, 259, 461
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	3 cut(s)	39, 255, 457
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	264, 314
FokI	GGATG	2 cut(s)	338, 620
Fsp4HI	GCNGC	2 cut(s)	264, 314
FspBI	CTAG	3 cut(s)	389, 483, 677
GluI	GCNGC	2 cut(s)	264, 314
GsaI	CCCAGC	2 cut(s)	377, 434
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	706
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	43, 259, 461
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	2 cut(s)	5, 137
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	3 cut(s)	83, 188, 446
Hpy166II	GTNNAC	2 cut(s)	100, 246
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	3 cut(s)	9, 605, 700
Hpy8I	GTNNAC	2 cut(s)	100, 246
HpyAV	CCTTC	2 cut(s)	73, 532
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	246, 263, 313, 451, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	426, 534, 548, 612, 639
Hsp92II	CATG	3 cut(s)	43, 259, 461
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	4 cut(s)	83, 385, 445, 541
Lsp1109I	GCAGC	2 cut(s)	275, 325
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	3 cut(s)	389, 483, 677
MaeIII	GTNAC	2 cut(s)	176, 654
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	228, 248
MluCI	AATT	5 cut(s)	33, 93, 280, 420, 570
MnlI	CCTC	9 cut(s)	151, 391, 430, 453, 523, 609, 628, 696, 707
MseI	TTAA	1 cut(s)	693
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	43, 259, 461
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	176, 654
PfeI	GAWTC	2 cut(s)	5, 137
PkrI	GCNGC	2 cut(s)	265, 315
PspEI	GGTNACC	1 cut(s)	176
PspFI	CCCAGC	2 cut(s)	373, 430
PspN4I	GGNNCC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	2 cut(s)	264, 314
Sau3AI	GATC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	228, 248
SfaNI	GCATC	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	5 cut(s)	33, 93, 280, 420, 570
SspMI	CTAG	3 cut(s)	389, 483, 677
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	358
TasI	AATT	5 cut(s)	33, 93, 280, 420, 570
TfiI	GAWTC	2 cut(s)	5, 137
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	3 cut(s)	153, 253, 303
TseFI	GTSAC	2 cut(s)	176, 654
TseI	GCWGC	2 cut(s)	263, 313
Tsp45I	GTSAC	2 cut(s)	176, 654
TspDTI	ATGAA	2 cut(s)	285, 446
TspRI	CASTG	3 cut(s)	153, 253, 303
VneI	GTGCAC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	33, 280
XspI	CTAG	3 cut(s)	389, 483, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.